PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015883401.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 638aa MW: 73744.3 Da PI: 8.2349

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015883401.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.3	2.9e-14	55	135	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY +Y+kevGFsv ++sk+ k ++e+++++ sk+g + ++r r tr +Ckak+ v ++k gk++++ +++eH+H+l+ XP_015883401.1 55 KFYIKYSKEVGFSVHSNSSKRCKGTNEVIRKEGESSKKGGK---------KKRCRRITRDNCKAKVAVVMSKMGKYVISVFVEEHSHPLS 135 6*******************9999999876555555544.........556677******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.3E-12	55	135	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.9E-28	256	350	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 638 aa Download sequence Send to blast
MNDLQYEANN HHVGNVEISL LSCSNDVDDV YIPQMSKNLK PTVGQEFIPI DKALKFYIKY 60 SKEVGFSVHS NSSKRCKGTN EVIRKEGESS KKGGKKKRCR RITRDNCKAK VAVVMSKMGK 120 YVISVFVEEH SHPLSSLKKV HLLRSHRNVS EAKKSLTQQF SAANVPTHQQ ISILEFEVRG 180 IENIGCTKKD IYNNKAKLHN EMQGQDAELL KEYFLTEQER DPSFMFKIDA DDECKLMHFF 240 WSDSVCKRAY GCFGDVVVFD TTYNTNQYGM VFAPLVGVNN HGQTVIFACA FLSDERTECF 300 VWLFELLKKS MPANTPKMII TDQDPAMIKA VAQSLPNTFH RYYSWYILEN FSIYLNAIIY 360 RDFYKDFKHC IWESKRSKDF ERKWTFIIEK ANLHDNEWLK SIFKLRSRWV PAYVNHVFSA 420 GMSSNQCAES SHAFFKRYIL KKNLLMDFIL RFNRALAHQR HEDLSADHVD INEKPVLKLP 480 LEMEKQMAEI YTRKIFYEFQ DELWHSLVTV TQIVSESDTH KMYTVQSCPN GGVPSFQEIA 540 YDKVLDYASC SCKKFESEGI PCGSRKSGGI SEEGSNVNHT TLKDPSQISQ HKVIKKTESP 600 RRPGIDYEKN KLNMIIGTTF RLEDFDMVEG IPVGRDEE

Sequence ? help Back to Top

Protein Sequence Length: 638 aa Download sequence Send to blast

MNDLQYEANN HHVGNVEISL LSCSNDVDDV YIPQMSKNLK PTVGQEFIPI DKALKFYIKY  60
SKEVGFSVHS NSSKRCKGTN EVIRKEGESS KKGGKKKRCR RITRDNCKAK VAVVMSKMGK  120
YVISVFVEEH SHPLSSLKKV HLLRSHRNVS EAKKSLTQQF SAANVPTHQQ ISILEFEVRG  180
IENIGCTKKD IYNNKAKLHN EMQGQDAELL KEYFLTEQER DPSFMFKIDA DDECKLMHFF  240
WSDSVCKRAY GCFGDVVVFD TTYNTNQYGM VFAPLVGVNN HGQTVIFACA FLSDERTECF  300
VWLFELLKKS MPANTPKMII TDQDPAMIKA VAQSLPNTFH RYYSWYILEN FSIYLNAIIY  360
RDFYKDFKHC IWESKRSKDF ERKWTFIIEK ANLHDNEWLK SIFKLRSRWV PAYVNHVFSA  420
GMSSNQCAES SHAFFKRYIL KKNLLMDFIL RFNRALAHQR HEDLSADHVD INEKPVLKLP  480
LEMEKQMAEI YTRKIFYEFQ DELWHSLVTV TQIVSESDTH KMYTVQSCPN GGVPSFQEIA  540
YDKVLDYASC SCKKFESEGI PCGSRKSGGI SEEGSNVNHT TLKDPSQISQ HKVIKKTESP  600
RRPGIDYEKN KLNMIIGTTF RLEDFDMVEG IPVGRDEE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015883401.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024933611.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	V4URE3	0.0	V4URE3_9ROSI; Uncharacterized protein (Fragment)
STRING	XP_006428864.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-95	FAR1-related sequence 5