PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015883445.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 341aa    MW: 38533.9 Da    PI: 6.646
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015883445.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.3e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd++l+ +++q+G g+W++ +++ g+ R++k+c++rw +yl
   XP_015883445.1 14 RGPWTPEEDQKLLAYIQQHGHGSWRSLPQKAGLQRCGKSCRLRWTNYL 61
                     89********************************************97 PP
2Myb_DNA-binding52.98.7e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +Ed+ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
   XP_015883445.1  67 RGNFSLQEDQTIIQLHALLGNR-WSAIAGHLP-KRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-25564IPR009057Homeodomain-like
PROSITE profilePS5129417.49961IPR017930Myb domain
SuperFamilySSF466891.94E-3111108IPR009057Homeodomain-like
SMARTSM007173.9E-141363IPR001005SANT/Myb domain
PfamPF002494.9E-171461IPR001005SANT/Myb domain
CDDcd001675.67E-111661No hitNo description
PROSITE profilePS5129425.53862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2665116IPR009057Homeodomain-like
SMARTSM007171.8E-1666114IPR001005SANT/Myb domain
PfamPF002491.2E-1567112IPR001005SANT/Myb domain
CDDcd001676.84E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGKSQCWDEA GLKRGPWTPE EDQKLLAYIQ QHGHGSWRSL PQKAGLQRCG KSCRLRWTNY  60
LRPDIKRGNF SLQEDQTIIQ LHALLGNRWS AIAGHLPKRT DNEIKNYWNT HLKKRLSKMG  120
IDPVTHKLKT AILSSATGDS KNLSNLSHVA QWEKARLQAE ARLVKEAKSR NQNELDYSLE  180
TQAQILKELN NNNNSGHSTK FARPRCLDIL RAWQSLLPNQ YDGILSCGGI SNINFLNSTP  240
TLTNMGTMDF NGVTGQCGSE LDEVFEALNP NNAGFEEAAD DHGDVDIDDG DVSDTWITQI  300
SNSTENYVGI SKGIWENNDD HHDHEINNKY FNNDVLKFLS F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015883445.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015883445.10.0transcription factor MYB106-like isoform X1
SwissprotQ9LE631e-100MY106_ARATH; Transcription factor MYB106
TrEMBLA0A2H5PT871e-107A0A2H5PT87_CITUN; Uncharacterized protein
STRINGXP_006440626.11e-107(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.11e-100myb domain protein 106