PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015883513.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bHLH

Protein Properties

Length: 228aa MW: 25400.7 Da PI: 6.0507

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015883513.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.4	0.00029	36	85	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 rr + erE++ R+++N+ f L l + ++ + Ka++L +A++++k+L XP_015883513.1 36 RRIHKAEREKQKREHLNELFLGLYNALELS----QQNNGKASVLCEATRFLKDL 85 788999*********************998....67889999999999999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	5.5E-6	32	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.89E-11	32	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.94E-5	33	90	No hit	No description
PROSITE profile	PS50888	11.071	35	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010106	Biological Process	cellular response to iron ion starvation
GO:0055072	Biological Process	iron ion homeostasis
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MGSEDAVPLV ETVNMAVEES ADRASRGKKN QRKVSRRIHK AEREKQKREH LNELFLGLYN 60 ALELSQQNNG KASVLCEATR FLKDLLVQIE CLRKEHASLL SESQYVATEK NELRDENSTL 120 KNQIEKLQSE LEARIVQSKP DLNVPPPVEY KAPEFASHFV GDSLAMPAAE PALPQPSAVF 180 VVPLRPDLQA YPLPGATQPA SNPISQVSKP HARYPTSADS WPSQLLDE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015883513.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024929707.1	1e-166	transcription factor bHLH47
Swissprot	Q9SN74	5e-61	BH047_ARATH; Transcription factor bHLH47
TrEMBL	A0A2N9J553	4e-96	A0A2N9J553_FAGSY; Uncharacterized protein
TrEMBL	W9QXK2	9e-96	W9QXK2_9ROSA; Uncharacterized protein
STRING	XP_008239804.1	4e-98	(Prunus mume)
STRING	XP_010092057.1	1e-96	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8223	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	2e-63	bHLH family protein

Publications ? help Back to Top
Rodríguez-Celma J, et al. The transcriptional response of Arabidopsis leaves to Fe deficiency. Front Plant Sci, 2013. 4: p. 276 [PMID:23888164] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Martínez-Trujillo M, et al. Chromate alters root system architecture and activates expression of genes involved in iron homeostasis and signaling in Arabidopsis thaliana. Plant Mol. Biol., 2014. 86(1-2): p. 35-50 [PMID:24928490] Li H,Wang L,Yang ZM Co-expression analysis reveals a group of genes potentially involved in regulation of plant response to iron-deficiency. Gene, 2015. 554(1): p. 16-24 [PMID:25300251] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]