PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015884051.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

WOX

Protein Properties

Length: 240aa MW: 27609.8 Da PI: 4.5468

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015884051.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.7	1.3e-20	102	162	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +p++ + +e+A++l +++e++V++WFqNrRa+ kk XP_015884051.1 102 RQRWTPTPLQLQILEQIFDEgNGTPNKLKVKEIATELaqhgQISETNVYNWFQNRRARSKK 162 89***************99************************************98 PP
2	Wus_type_Homeobox	97.7	9.5e-32	101	164	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPtp Q++iLe+++++G tPnk ++++i++eL+++G+i+++NV++WFQNr+aR+++kq XP_015884051.1 101 SRQRWTPTPLQLQILEQIFDEGNGTPNKLKVKEIATELAQHGQISETNVYNWFQNRRARSKKKQ 164 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.8E-17	95	165	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.24	98	163	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.99E-18	100	164	IPR009057	Homeodomain-like
SMART	SM00389	1.6E-12	100	167	IPR001356	Homeobox domain
CDD	cd00086	8.82E-13	102	164	No hit	No description
Pfam	PF00046	2.6E-18	102	162	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MLMEWVWESQ EQNHQEELLQ LQIDHDQQNP DGVAGLYVKV MTDDQMELLR RQISVYATIC 60 EQLAEMHKAI TALQDPSGVG TRVGNLYCDS LMVSGGHKMG SRQRWTPTPL QLQILEQIFD 120 EGNGTPNKLK VKEIATELAQ HGQISETNVY NWFQNRRARS KKKQLIPPTN NVELEAEAEA 180 QVRVESLKEQ DSSNPENIQL HDENENVYFL RTEIDDTEFT DSAAIFHQFG SFEPYTKTKM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	155	163	RRARSKKKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015884051.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015884051.1	0.0	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	4e-73	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A438ETD4	3e-79	A0A438ETD4_VITVI; WUSCHEL-related homeobox 8
TrEMBL	D7UDB5	3e-79	D7UDB5_VITVI; Uncharacterized protein
TrEMBL	V7ART8	2e-79	V7ART8_PHAVU; Uncharacterized protein
STRING	VIT_18s0122g01140.t01	6e-80	(Vitis vinifera)
STRING	XP_007136031.1	3e-80	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	2e-62	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]