PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015884269.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family CO-like
Protein Properties Length: 339aa    MW: 37388.9 Da    PI: 6.1079
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015884269.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.61.2e-08436436
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                    + C+ +++  ++lfC+ ++ +lC +C ++ H  
  XP_015884269.1  4 KLCDSCKSATATLFCRADSAFLCVNCDTKVHAA 36
                    68***************************9954 PP
2zf-B_box27.85.2e-094691342
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     ++C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  XP_015884269.1 46 VWVCEVCEQAPAHVTCKADAASLCVTCDRDIHSAnplarrHERVPV 91
                    689*****************************66899999*99986 PP
3CCT70.44.5e-24278321144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  XP_015884269.1 278 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 321
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.879148IPR000315B-box-type zinc finger
SMARTSM003364.8E-15148IPR000315B-box-type zinc finger
PfamPF006435.9E-7443IPR000315B-box-type zinc finger
CDDcd000219.99E-10548No hitNo description
PROSITE profilePS5011910.7514491IPR000315B-box-type zinc finger
PfamPF006433.0E-74691IPR000315B-box-type zinc finger
CDDcd000217.52E-94791No hitNo description
SMARTSM003361.5E-104991IPR000315B-box-type zinc finger
PROSITE profilePS5101716.787278320IPR010402CCT domain
PfamPF062035.0E-18278320IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MASKLCDSCK SATATLFCRA DSAFLCVNCD TKVHAANKLA SRHARVWVCE VCEQAPAHVT  60
CKADAASLCV TCDRDIHSAN PLARRHERVP VTPFYDSVSS TNSTAVKPGA PINLLEDRYY  120
SDDVEAETEV STEEAEAASW LLPNPKAMES PDLNSGQYVF TDVDPYLDVD YGAVDRKLEV  180
QEQNSSGTDG VVPVQTKNAH LPVVNEQCFE MEFPVSKQPF VYGYSAAHCL SQSVSSSSLD  240
VGVVPDGNAM TDVSNPYTKP ISSVMDSAHA VPMSSADREA RVLRYREKRK NRKFEKTIRY  300
ASRKAYAETR PRIKGRFAKR TDVDLEADRN YGYGVVPTF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015884269.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884269.10.0zinc finger protein CONSTANS-LIKE 4
SwissprotQ940T91e-148COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A067KBG61e-177A0A067KBG6_JATCU; Uncharacterized protein
STRINGEOY292671e-176(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-146CONSTANS-like 4