PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015884278.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 285aa    MW: 31042.1 Da    PI: 7.333
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015884278.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-1378121855
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      Er RR+++++ f+ L +llP++    ++K +K++i+ +Av+YIk L+
  XP_015884278.1  78 TERERRKKMRDMFSVLHSLLPQL----APKADKSTIVDEAVKYIKTLE 121
                     7*********************8....79****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.65670120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-1574133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.71E-1475125No hitNo description
Gene3DG3DSA:4.10.280.105.4E-1575132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-978126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-1078121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.31E-5208247No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MSSLELEDNP FWAGVNSGSS SGASEEKLGM MNHPHVSSSS SPTATTTSTT IHQKMKSSFK  60
NQKADGGGGG GGELHIWTER ERRKKMRDMF SVLHSLLPQL APKADKSTIV DEAVKYIKTL  120
EQTLQTLQEQ KANKILMNEH GAPSMPKSQT AHEALTQPGE SILGDHHHQV GGPISQADNL  180
FAPNSSSSSF RTWFSPNVVV NMCGDSAQIS VCSPRKPGLS ATIFYILEKH KLHVLSAHIS  240
SYHHRCMYMI HAHAGGAADH FPEALSVEDI FKLAAGEMNL WLLSC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015884278.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884278.10.0transcription factor bHLH95
TrEMBLA0A251RC843e-89A0A251RC84_PRUPE; Uncharacterized protein
STRINGEMJ279761e-89(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47733358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.18e-38bHLH family protein