PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015884288.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 163aa    MW: 18528.7 Da    PI: 9.887
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015884288.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.7e-184392255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  XP_015884288.1 43 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPIAAARAYDIAVFYLRG 92
                    69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.8E-3643106IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2143101IPR016177DNA-binding domain
PROSITE profilePS5103222.19443100IPR001471AP2/ERF domain
PfamPF008475.6E-114492IPR001471AP2/ERF domain
CDDcd000182.07E-2744102No hitNo description
PRINTSPR003679.1E-124455IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-3044101IPR001471AP2/ERF domain
PRINTSPR003679.1E-1282102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MMEGDCCSTS STSTTTTTSS SEKRKQRHNS NNHRHHQHQV EKPYRGIRMR KWGKWVAEIR  60
EPNKRSRIWL GSYTTPIAAA RAYDIAVFYL RGPSARLNFP ELIFQEDQLL LHDRSAASIR  120
KKATEVGAKV DAIQTALHAP SQPKSNPKPD LNAYPDPENS DED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1542100463ATERF1
3gcc_A6e-1542100463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00188DAPTransfer from AT1G46768Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015884288.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884288.11e-121ethylene-responsive transcription factor RAP2-1-like
SwissprotQ8LC303e-51RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A1S3BU566e-74A0A1S3BU56_CUCME; ethylene-responsive transcription factor ERF011-like
STRINGXP_008452588.11e-74(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.17e-52related to AP2 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]