PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015884313.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HSF
Protein Properties Length: 371aa    MW: 41473.6 Da    PI: 8.128
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015884313.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.43.6e-36251172103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg+k+ll++
  XP_015884313.1  25 FLTKTYQLVDDPSTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKHLLCE 110
                     9*****************************************************************99.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k++
  XP_015884313.1 111 IHRRKTA 117
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.5E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.6E-6121114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.03E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.6E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MALMLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPSTDH IVSWGEDDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKHLLCE IHRRKTAQPQ  120
VAVNHHHHHH HNPHSPLGIN GPSFFPFSSR VSISPSDSDE QHNWCDSPPP PLSSPRGGNT  180
GGGVPAAGGC NYNTSVTALS EDNERLRRSN SMLMSELAHM RKLYNDIIYF VQNHVKPVAP  240
SNSYPSLLLC NAPASVINSN NNASTLHNKP LNQFLGYYPN NNNPKQNHPP PPPPQLHALN  300
SPSTTSKSSV TILEEPSSNG CKTKLFGVPL HSKKRLHPEY ASNPTTMETN KARLVLEKDD  360
LGLNLMPPST C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-212111626131Heat shock factor protein 1
5d5v_B2e-212111626131Heat shock factor protein 1
5d5v_D2e-212111626131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015884313.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884313.10.0heat stress transcription factor B-4
SwissprotQ9C6351e-121HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A2I4EKB10.0A0A2I4EKB1_JUGRE; heat stress transcription factor B-4-like
STRINGPOPTR_0014s02700.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-111heat shock transcription factor B4