PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015884335.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bHLH

Protein Properties

Length: 397aa MW: 42736.2 Da PI: 5.1161

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015884335.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.5	7.5e-16	204	250	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq XP_015884335.1 204 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 250 6***********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.8E-20	197	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.84E-21	197	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.86	200	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.28E-17	203	254	No hit	No description
Pfam	PF00010	2.6E-13	204	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.3E-18	206	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MADLYGTAQS SGTGLSSEPE EISNILNQLL HNSSSPYSLA LSSSSSSSCM SFKTKYMHLL 60 HSPQHPIASF PDTVSAPRLF GSEADRLRFC GSTNQSDSDC RVLDGNSVGG GSSAVAADSS 120 SGFFSEPDAY FEEELKGGLD NTLSSAGVAD SDANTYLKAR RISPDNDLGD FSCDSEKGPE 180 ASEVPSNPAA PPRSSSKRSR AAEVHNLSEK RRRSRINEKM KALQNLIPNS NKTDKASMLD 240 EAIEYLKQLQ LQVQMLSMRN GNLHPMCLPG VLQPLQLPLP HTGMGYNEGN KFLNSSRGLN 300 AFSSNEERPM QSAYNLSNSC NISNQPTIIP SVSDITTSEA ALGFEQSIQA HYRPFNLLAS 360 SEEIIADGKS HLQLDTSHTG KNCSSDVDVL SLKSPEV

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MADLYGTAQS SGTGLSSEPE EISNILNQLL HNSSSPYSLA LSSSSSSSCM SFKTKYMHLL  60
HSPQHPIASF PDTVSAPRLF GSEADRLRFC GSTNQSDSDC RVLDGNSVGG GSSAVAADSS  120
SGFFSEPDAY FEEELKGGLD NTLSSAGVAD SDANTYLKAR RISPDNDLGD FSCDSEKGPE  180
ASEVPSNPAA PPRSSSKRSR AAEVHNLSEK RRRSRINEKM KALQNLIPNS NKTDKASMLD  240
EAIEYLKQLQ LQVQMLSMRN GNLHPMCLPG VLQPLQLPLP HTGMGYNEGN KFLNSSRGLN  300
AFSSNEERPM QSAYNLSNSC NISNQPTIIP SVSDITTSEA ALGFEQSIQA HYRPFNLLAS  360
SEEIIADGKS HLQLDTSHTG KNCSSDVDVL SLKSPEV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a role in floral organogenesis. Promotes the growth of carpel margins and of pollen tract tissues derived from them. {ECO:0000269\|PubMed:10225997, ECO:0000269\|Ref.8}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015884335.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by the A class gene AP2 in the first whorl and by ARF3/ETT in gynoecium. {ECO:0000269\|PubMed:11245574}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015884335.1	0.0	transcription factor SPATULA-like isoform X1
Swissprot	Q9FUA4	7e-45	SPT_ARATH; Transcription factor SPATULA
TrEMBL	A0A2P5F8U9	1e-160	A0A2P5F8U9_TREOI; Basic helix-loop-helix transcription factor
STRING	XP_010112171.1	1e-146	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2276	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	6e-39	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Pabón-Mora N,Wong GK,Ambrose BA Evolution of fruit development genes in flowering plants. Front Plant Sci, 2014. 5: p. 300 [PMID:25018763] Moubayidin L,Ostergaard L Dynamic control of auxin distribution imposes a bilateral-to-radial symmetry switch during gynoecium development. Curr. Biol., 2014. 24(22): p. 2743-8 [PMID:25455035] Pfannebecker KC,Lange M,Rupp O,Becker A Seed Plant-Specific Gene Lineages Involved in Carpel Development. Mol. Biol. Evol., 2017. 34(4): p. 925-942 [PMID:28087776] Zumajo-Cardona C,Ambrose BA,Pabón-Mora N Evolution of the SPATULA/ALCATRAZ gene lineage and expression analyses in the basal eudicot, Bocconia frutescens L. (Papaveraceae). Evodevo, 2017. 8: p. 5 [PMID:28331573] Reyes-Olalde JI, et al. The bHLH transcription factor SPATULA enables cytokinin signaling, and both activate auxin biosynthesis and transport genes at the medial domain of the gynoecium. PLoS Genet., 2017. 13(4): p. e1006726 [PMID:28388635] Wu M, et al. SPATULA regulates floral transition and photomorphogenesis in a PHYTOCHROME B-dependent manner in Arabidopsis. Biochem. Biophys. Res. Commun., 2018. 503(4): p. 2380-2385 [PMID:29966653]