PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015884336.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bHLH

Protein Properties

Length: 396aa MW: 42608.1 Da PI: 5.0032

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015884336.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.5	7.5e-16	203	249	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq XP_015884336.1 203 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 249 6***********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.84E-21	196	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-20	196	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.86	199	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.94E-17	202	253	No hit	No description
Pfam	PF00010	2.6E-13	203	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.3E-18	205	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MADLYGTAQS SGTGLSSEPE EISNILNQLL HNSSSPYSLA LSSSSSSSCM SFKTKYMHLL 60 HSPQHPIASF PDTVSAPRLF GSEADRLRFC GSTNQSDSDC RVLDGNSVGG GSSAVAADSS 120 SGFFSEPDAY FEEELKGGLD NTLSSAGVAD SDANTYLKAR RISPDNDLGD FSCDSEGPEA 180 SEVPSNPAAP PRSSSKRSRA AEVHNLSEKR RRSRINEKMK ALQNLIPNSN KTDKASMLDE 240 AIEYLKQLQL QVQMLSMRNG NLHPMCLPGV LQPLQLPLPH TGMGYNEGNK FLNSSRGLNA 300 FSSNEERPMQ SAYNLSNSCN ISNQPTIIPS VSDITTSEAA LGFEQSIQAH YRPFNLLASS 360 EEIIADGKSH LQLDTSHTGK NCSSDVDVLS LKSPEV

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MADLYGTAQS SGTGLSSEPE EISNILNQLL HNSSSPYSLA LSSSSSSSCM SFKTKYMHLL  60
HSPQHPIASF PDTVSAPRLF GSEADRLRFC GSTNQSDSDC RVLDGNSVGG GSSAVAADSS  120
SGFFSEPDAY FEEELKGGLD NTLSSAGVAD SDANTYLKAR RISPDNDLGD FSCDSEGPEA  180
SEVPSNPAAP PRSSSKRSRA AEVHNLSEKR RRSRINEKMK ALQNLIPNSN KTDKASMLDE  240
AIEYLKQLQL QVQMLSMRNG NLHPMCLPGV LQPLQLPLPH TGMGYNEGNK FLNSSRGLNA  300
FSSNEERPMQ SAYNLSNSCN ISNQPTIIPS VSDITTSEAA LGFEQSIQAH YRPFNLLASS  360
EEIIADGKSH LQLDTSHTGK NCSSDVDVLS LKSPEV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015884336.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015884336.1	0.0	transcription factor SPATULA-like isoform X2
TrEMBL	A0A2P5F8U9	1e-161	A0A2P5F8U9_TREOI; Basic helix-loop-helix transcription factor
STRING	XP_010112171.1	1e-148	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	4e-38	bHLH family protein