PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015884394.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HSF
Protein Properties Length: 393aa    MW: 44226 Da    PI: 4.6199
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015884394.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.91.9e-34411322102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++e++ed+++++++sws++ nsf+v+d++++++++Lp+yFkhsnf+SF+RQLn+YgF+kv+ ++         weF+++ F  g+++ll++
  XP_015884394.1  41 FLTKTFEMVEDPTTDSIVSWSTSRNSFIVWDSHRLSTHLLPRYFKHSNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQRHLLKT 126
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     ikr+++
  XP_015884394.1 127 IKRRRH 132
                     ***975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.7E-6037130IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.5E-3737130IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.18E-3337130IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.9E-194164IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-3041130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-197991IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434080104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-1992104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MEGVIVKEEE TLTCTAGSSS SSSSVTPQPI EGLHEVGPPP FLTKTFEMVE DPTTDSIVSW  60
STSRNSFIVW DSHRLSTHLL PRYFKHSNFS SFIRQLNTYG FRKVDPDRWE FANEGFLGGQ  120
RHLLKTIKRR RHVSQNVNQQ GGACVEVGQF GLEGEFDRLK RDRNVLMAEI VRLRQQQQSS  180
REQVLAMENR LQNTEKKQHQ IMAFLAKALH SPTFIQQFLQ RKAEGRNLHG VEIGRKRRLT  240
ASPSVENFQE EVVSLAAASS DQAMNYGTKQ EQEEFPTMES EIETFFSAAL DNESSSAIQD  300
PNESSIPTAI GGNLDSVDDQ GIWEGLLSDD LVGGNADEEA VVVGGESELD VEVEDLVAEP  360
DEWGEDLEDL VDQMGYLRRT RQQSAMRNRS SIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-243913027129Heat shock factor protein 1
5d5v_B1e-243913027129Heat shock factor protein 1
5d5v_D1e-243913027129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123129LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015884394.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884394.10.0heat shock factor protein HSF30
SwissprotP411521e-148HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A061GKJ00.0A0A061GKJ0_THECC; Heat shock transcription factor A2 isoform 4
STRINGEOY299280.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82253143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-117heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]