PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015884427.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 305aa    MW: 34060.1 Da    PI: 7.1447
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015884427.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.66.9e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed++l  +++ +G g W+  +++ g++R++k+c++rw++yl
   XP_015884427.1 14 RGAWTALEDKILTGYINAHGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding51.42.6e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ + +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ 
   XP_015884427.1  67 RGNISHDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111
                      78999*****************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-22564IPR009057Homeodomain-like
PROSITE profilePS5129413.225961IPR017930Myb domain
SuperFamilySSF466894.3E-2712108IPR009057Homeodomain-like
SMARTSM007171.1E-101363IPR001005SANT/Myb domain
PfamPF002492.3E-121461IPR001005SANT/Myb domain
CDDcd001678.48E-81661No hitNo description
PROSITE profilePS5129424.56262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-2465115IPR009057Homeodomain-like
SMARTSM007171.3E-1366114IPR001005SANT/Myb domain
PfamPF002492.6E-1467111IPR001005SANT/Myb domain
CDDcd001672.03E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGRSPCCSKE GLNRGAWTAL EDKILTGYIN AHGEGKWRNL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SHDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLCKKANAQP  120
SSPPSKQNSQ RKSKAKSQPS EPKITKPSDS ASSAATKTQV VRAKASRCTA TVVIPTLSPP  180
GETCTHKLNS SAATVDPLEL QFRDQNNLVN NQPQDSAGSE MHCGAHEEQF HGTHSQGCDM  240
LKFSYDCDGD NWENFNNLTM STDELPFEEP IFNDFAVGRL EDDNADLSLE SLAFLLECEE  300
WPTDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015884427.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884427.10.0myb-related protein Zm38-like
TrEMBLA0A2N9ET871e-112A0A2N9ET87_FAGSY; Uncharacterized protein
STRINGEOY300271e-110(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.11e-60MYB family protein