PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015884439.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 173aa    MW: 19751 Da    PI: 5.6689
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015884439.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.88.4e-32113170259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYG+K+vk+s++pr+YYrC+ +gCpvkk+ver++edp++v++tYeg Hnh+
  XP_015884439.1 113 EDGFKWRKYGKKMVKNSPNPRNYYRCSVEGCPVKKRVERDREDPRYVITTYEGVHNHQ 170
                     8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-3498171IPR003657WRKY domain
SuperFamilySSF1182902.22E-28105171IPR003657WRKY domain
PROSITE profilePS5081130.687107172IPR003657WRKY domain
SMARTSM007743.2E-37112171IPR003657WRKY domain
PfamPF031065.2E-25113170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MLLNILLLFF CHPFLMSNSK SISDSPENDF AEGSNFELNE FLMFDDWLGE DPASMVSGSL  60
TNPVYQASEG DDPSGGSSHI GGHTSRENEG LREKKETRER VAFKTKSEVE ILEDGFKWRK  120
YGKKMVKNSP NPRNYYRCSV EGCPVKKRVE RDREDPRYVI TTYEGVHNHQ SSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-25102169774Probable WRKY transcription factor 4
2lex_A1e-25102169774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015884439.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884439.11e-127probable WRKY transcription factor 50
SwissprotQ8VWQ56e-47WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBLA0A059CLX91e-72A0A059CLX9_EUCGR; Uncharacterized protein
TrEMBLA0A251RAL22e-72A0A251RAL2_PRUPE; Uncharacterized protein
STRINGXP_010047371.12e-73(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-47WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]