PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015884549.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family LBD
Protein Properties Length: 250aa    MW: 28303.2 Da    PI: 7.5474
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015884549.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260109.82e-34161142100
          DUF260   2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                     CaaC+++r++C++dC+lapyfp++++++f n++klFG +n+lkl+k+l++ ++++am+s++++A+ ra dPv G++++il+l+  ++   +el++
  XP_015884549.1  16 CAACRYQRKRCPPDCPLAPYFPSNRENDFHNARKLFGINNMLKLIKNLDPPNKHIAMKSIIFQANKRALDPVGGCHRIILDLELLIQAYTSELQH 110
                     *****************************************************************************************999998 PP

          DUF260  97 lkee 100
                     + ++
  XP_015884549.1 111 VLHK 114
                     7665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.58314115IPR004883Lateral organ boundaries, LOB
PfamPF031956.8E-3216110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MRNTANSKNR KLETVCAACR YQRKRCPPDC PLAPYFPSNR ENDFHNARKL FGINNMLKLI  60
KNLDPPNKHI AMKSIIFQAN KRALDPVGGC HRIILDLELL IQAYTSELQH VLHKLDLCRK  120
KALSGPFPMP PSCGYPLQPP VGTHHQALPY NNNNLQQQHT DTCLPFGFLQ PVEEEHGLQE  180
NYYFGVDVVL NDGEAVSVVD WKVKEEKQTD FNLDPVGENN QTHRLHSTGT IQSSDKAVSE  240
EDVNATLQKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-161610812104LOB family transfactor Ramosa2.1
5ly0_B2e-161610812104LOB family transfactor Ramosa2.1
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015884549.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884549.10.0LOB domain-containing protein 7-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41333259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.11e-34LOB domain-containing protein 22