PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015884746.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 394aa    MW: 44772.1 Da    PI: 9.1743
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015884746.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.11.6e-1831113998
                     HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     d + +  l +pkkf++  ++kk+ +  + l+ +sg  W+v l  + k+ +++++ GW+eFvk++ Lk +D +vF+++g+s+f   v +f+
  XP_015884746.1  31 DDFDQE-LAVPKKFCN--NLKKKLPDVVALKGPSGLLWTVGL--TTKDTAVFFKHGWQEFVKDHSLKPNDLLVFRYNGESQF--DVLMFD 113
                     555554.99******4..455669999***************..*********************************99999..777776 PP
2B334.63.4e-11269365198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE...E-SSSEE.. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk...ldgrsefel 92 
                     f  ++ p+ v k+  + lp   +++h+    ++++++l+      W+ k++y+++++   +t GWk F+ +n+L+e D +vF+      +++f l
  XP_015884746.1 269 FMIIMRPNQVYKRFYMLLPSGWVSNHMAL--QNQDVILR-IGKSCWRTKFTYNRTRRVGGITCGWKFFAVDNNLEEFDACVFEpgiP-LSNTFVL 359
                     66789999***************999655..34467755.466789999999***99999***********************5321.2367777 PP

                     EEEEE- CS
              B3  93 vvkvfr 98 
                      vk+fr
  XP_015884746.1 360 DVKIFR 365
                     777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.47E-2122114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.7922115IPR003340B3 DNA binding domain
CDDcd100174.42E-1724113No hitNo description
SMARTSM010198.2E-1525115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.3E-2126114IPR015300DNA-binding pseudobarrel domain
PfamPF023621.7E-1533112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-14262365IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-12266349IPR015300DNA-binding pseudobarrel domain
CDDcd100176.86E-13268365No hitNo description
PfamPF023622.3E-9269365IPR003340B3 DNA binding domain
PROSITE profilePS508639.742269367IPR003340B3 DNA binding domain
SMARTSM010193.8E-5269367IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MGESCKDCSK WAEDIYWAHF QTIRFSQTLL DDFDQELAVP KKFCNNLKKK LPDVVALKGP  60
SGLLWTVGLT TKDTAVFFKH GWQEFVKDHS LKPNDLLVFR YNGESQFDVL MFDSENMCEK  120
EASYFVRKYG HSKHENGCLT KRKSREISSE EMHASSKNGG CSVLEKSEDD PSIALPSEEQ  180
VITPVTDEKK VQSKTKSAQP TRSRRIAAKR GRPAGSVRLL NNTKDAPNKG SSGAYFMEYV  240
SNRRPITEEE KMKAQQLAQE ASSTSLESFM IIMRPNQVYK RFYMLLPSGW VSNHMALQNQ  300
DVILRIGKSC WRTKFTYNRT RRVGGITCGW KFFAVDNNLE EFDACVFEPG IPLSNTFVLD  360
VKIFRVVEDF TPPTGTSSAT PKGTKRKLIV PMDT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015884746.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884746.10.0B3 domain-containing protein REM16
RefseqXP_015884748.10.0B3 domain-containing protein REM16
RefseqXP_015884749.10.0B3 domain-containing protein REM16
RefseqXP_015884750.10.0B3 domain-containing protein REM16
RefseqXP_015884751.10.0B3 domain-containing protein REM16
RefseqXP_015884752.10.0B3 domain-containing protein REM16
RefseqXP_015884753.10.0B3 domain-containing protein REM16
RefseqXP_024930277.10.0B3 domain-containing protein REM16
RefseqXP_024930278.10.0B3 domain-containing protein REM16
RefseqXP_024930279.10.0B3 domain-containing protein REM16
TrEMBLA0A2P5FMY31e-146A0A2P5FMY3_TREOI; B3 DNA binding domain containing protein
STRINGXP_010089922.11e-134(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-71B3 family protein