PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015884756.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family G2-like
Protein Properties Length: 340aa    MW: 38050.3 Da    PI: 9.3468
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015884756.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1017.7e-32147200255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  XP_015884756.1 147 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 200
                     9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.68E-15144201IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-28145201IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-23147200IPR006447Myb domain, plants
PfamPF002492.2E-7148199IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MTRTSSSHFP DLSLQISPPS VPDHSEANKE VAGYDGLLTR KPLFCSDRSS TTTDSGSSGS  60
DLSHDNGFNQ FDGAYNHLGS GEPTLSLGFD MKDLIPPVQL PRNLNNNHHH HHHHHHHHQL  120
HQPQIYGRDF KRNGRAISSV KRSIRAPRMR WTTTLHAHFV HAVQLLGGHE RATPKSVLEL  180
MNVKDLTLAH VKSHLQMYRT VKSTDKAATG QGQTDIGLNL RPGIADTDGV LSNSKKSNSQ  240
TTTILPKSQR GSWSSSLETQ ERRKLSHEND LKYSALRENC TKVEKQNSDL QVADRLKERL  300
DSSSLSSSNM YLNLEFTLGR PSWQMDHSHE SSNEATLLKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-16148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-16148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-16148202357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-16148202357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-16148202357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-16148202357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-16148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-16148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-16148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-16148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-16148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-16148202458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015884756.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884755.10.0probable transcription factor KAN4 isoform X1
RefseqXP_015884756.10.0probable transcription factor KAN4 isoform X2
TrEMBLB9R7K31e-116B9R7K3_RICCO; Uncharacterized protein
TrEMBLF6H1F31e-116F6H1F3_VITVI; Uncharacterized protein
STRINGcassava4.1_011255m1e-119(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.13e-64G2-like family protein