PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015885179.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 258aa    MW: 27918.8 Da    PI: 5.6329
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015885179.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.4e-1965115155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  XP_015885179.1  65 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 115
                     68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.0E-1365115IPR001471AP2/ERF domain
SMARTSM003803.6E-3566129IPR001471AP2/ERF domain
PROSITE profilePS5103223.4266123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-3266124IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2266124IPR016177DNA-binding domain
PRINTSPR003672.7E-106778IPR001471AP2/ERF domain
CDDcd000184.03E-3267125No hitNo description
PRINTSPR003672.7E-1089105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MSTEAQSSET ESSSSNSSSS SSPPSPSSAG SGSTHSLSNI KSQQSSHDEE PNKKIKRIRD  60
SSKHPVYRGV RMRNWGKWVS EIREPRKKSR IWLGTFPTPE MAARAHDVAA LSIKGNSAIL  120
NFPHLVDLLP RPVSLSPRDI QAAATKAAQM HKFDSPPSLS SSTLSSSSSS LSSLVSAIDL  180
GTESDELSEI VKLPSLGTSY ESSELSNEFV FVDSEDGWVY PPPWMQNVEN CCSYVGNELG  240
VTESSVISSS FGSLFWDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-2161128977Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015885179.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015885179.10.0dehydration-responsive element-binding protein 3-like
RefseqXP_024930268.10.0dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD32e-75DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A2P6Q0168e-94A0A2P6Q016_ROSCH; Putative transcription factor AP2-EREBP family
STRINGEOY297481e-93(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-75ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]