PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015885180.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family CPP
Protein Properties Length: 339aa    MW: 37153.3 Da    PI: 6.6551
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015885180.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR51.32.2e-161554140
             TCR  1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
                    k++kgC+Ckks ClkkYCeCf+a+  Cse+CkCe+CkN e
  XP_015885180.1 15 KHNKGCQCKKSGCLKKYCECFQANILCSENCKCENCKNFE 54
                    589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163420.342155IPR005172CRC domain
SMARTSM011141.1E-181556IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-121853IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
EKIQEDAGEL QSAGKHNKGC QCKKSGCLKK YCECFQANIL CSENCKCENC KNFEGSEERR  60
SLFHDDHNAM ANIQHAANAA INGAIGSSGY GNLTVSRKRK THRLSSSIGT KDQSIHMNAR  120
GQEESHLSAF MPPSQISLPV CHPANTEALR SSRLTYRSSL ADVLQPQNVK DFCSVLVVVS  180
ERAAKRCSER RRNERSNKTS SFTQEPEHGQ KELDVHNSVQ DGYLEGKQAD TDGSSDSRSD  240
GDDVQNNRPI SPGTLALMCD EKDMMFGEAV SPNGVIPSGQ NTLKSSNGLG WTDVYAEQEK  300
CILTEFRDLL RGLIICGSTK VEETAYPPAK SETGSKEPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-1596477132Protein lin-54 homolog
5fd3_B7e-1596477132Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195100SRKRKT
297101KRKTH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015885180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015885180.20.0protein tesmin/TSO1-like CXC 5
TrEMBLA0A2P5G1M21e-110A0A2P5G1M2_TREOI; Lin-54-like
TrEMBLA0A314U9Y31e-110A0A314U9Y3_PRUYE; Protein tesmin/TSO1-like CXC 5
STRINGEMJ232261e-110(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.21e-48Tesmin/TSO1-like CXC domain-containing protein