PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015885201.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 1059aa    MW: 116390 Da    PI: 5.755
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015885201.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.2e-183783148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEde l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
   XP_015885201.1 37 KGQWTPEEDEVLRRAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83
                     799****************************9.************986 PP
2Myb_DNA-binding64.52e-2089135148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEde+++++v+++G++ W+tI+++++ gR +kqc++rw+++l
   XP_015885201.1  89 KGPWSKEEDEIIIELVNKYGPKKWSTISQHLP-GRIGKQCRERWHNHL 135
                      79******************************.*************97 PP
3Myb_DNA-binding49.59.9e-16141183145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE++ l++a++ +G++ W+   + ++ gRt++++k++w+
   XP_015885201.1 141 KEAWTQEEELALIRAHQIYGNK-WAELTKFLP-GRTDNSIKNHWN 183
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.7823283IPR017930Myb domain
SMARTSM007178.6E-153685IPR001005SANT/Myb domain
PfamPF002491.6E-153783IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-223890IPR009057Homeodomain-like
SuperFamilySSF466899.33E-163893IPR009057Homeodomain-like
CDDcd001671.04E-134083No hitNo description
PROSITE profilePS5129432.98584139IPR017930Myb domain
SuperFamilySSF466891.36E-3186182IPR009057Homeodomain-like
SMARTSM007171.6E-1988137IPR001005SANT/Myb domain
PfamPF002497.2E-1989135IPR001005SANT/Myb domain
CDDcd001675.24E-1791135No hitNo description
Gene3DG3DSA:1.10.10.605.8E-2891139IPR009057Homeodomain-like
PROSITE profilePS5129419.674140190IPR017930Myb domain
SMARTSM007173.2E-15140188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-21140190IPR009057Homeodomain-like
PfamPF002497.3E-14141184IPR001005SANT/Myb domain
CDDcd001677.25E-12143183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1059 aa     Download sequence    Send to blast
MEGDRSISTP SDGLGDGFQK IRALHGRTSG PTRRSTKGQW TPEEDEVLRR AVQRFKGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IELVNKYGPK KWSTISQHLP  120
GRIGKQCRER WHNHLNPAIN KEAWTQEEEL ALIRAHQIYG NKWAELTKFL PGRTDNSIKN  180
HWNSSVKKKL DSYLKSGLLA QFQGLPHVGH QNQPMVSSSS RMQSSGDDSG HKGTEAEEIS  240
ECSQDSTFSG RFPSSNDMAS VVLCTRKEFQ GTNNSGLGKD PNPSSASCSV PYYPSVEGSA  300
FSVPEISPEI GSAAKFLEQG FPHDAETSIS GDIQFNLDEL PNISSLELAC ERSGIPTHCL  360
GSDVRQGENV QFQTSEGLSV STSMGTMPLS SNKPAHMLIS DDECCTVLFS EAMNNRCFSS  420
KTLAKGSDFV GLGGCTGSLL SHSSNIPMSE ASGTAATQLY CPSNSNATGT SCSQTFHPTV  480
ISANDRPLIF GGESNHLFGT QEYEYIISSD DGFVFANDCA NSPCNDGTDA IGLHEQSDTL  540
KDSSKLVPVN TFSSRSDTQT CPMDRRPDEL REQKDTGALC YEPPRFPSLD VPFFSCDLVQ  600
SSSDMQQEYS PLGIRQLMMS SMNCLTPFRL WDSPTRDNSP DAVLKSAAKT FTGTPTILKK  660
RHRELFSPLS DRRCDKKLDT HVTSSLMRDF SRLDVMFDDS GSHKAPSVSP SCCQDGNTRN  720
SAASAADKEN QGHLTPERLK KGSDSTEISD GSIPEKDVED SESQEKTKHG VVDVDAKTKI  780
DAGPTSEIEE MPSEILVEHN INDLLLYSPD QVNLKAERAL GSGMKTPRNQ YHKSSEPTSN  840
QCVGQTSAER QCASVCSPSI SGKKLVSCSV AETCVRSDSS LILPEMMGCN AGSDATTETI  900
SMFGSTPFKR SIESPSAWKS PWFINSFLPC PRIDTEITIE DFGYFMSPGN RSYDAIGLMK  960
QVSEQTAAAY ANAQEILGDE TPETLFQRRT SHERRDQENN HVRPNQLQSH SHLPQNILTE  1020
RRTLDFSECG TPGKGIEHGK SSTSVSFSSP SSYLLKGCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-69371906159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-69371906159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015885201.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015885201.10.0transcription factor MYB3R-1-like
TrEMBLA0A251RDM50.0A0A251RDM5_PRUPE; Uncharacterized protein
STRINGEMJ265960.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein