PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015885388.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 346aa    MW: 38761.2 Da    PI: 6.7991
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015885388.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding605.2e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv+ ++++G g+W++ ++  g++R++k+c++rw +yl
   XP_015885388.1 14 KGPWTPEEDQKLVQHIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding53.36.5e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++++E++ +++++  lG++ W++Ia +++ gRt++++k++w++++
   XP_015885388.1  67 RGKFSQDEEQTILRLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHM 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-25664IPR009057Homeodomain-like
PROSITE profilePS5129418.556961IPR017930Myb domain
SuperFamilySSF466897.34E-3211108IPR009057Homeodomain-like
SMARTSM007175.7E-161363IPR001005SANT/Myb domain
PfamPF002498.4E-181461IPR001005SANT/Myb domain
CDDcd001676.09E-131661No hitNo description
PROSITE profilePS5129426.36562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-2765117IPR009057Homeodomain-like
SMARTSM007174.6E-1666114IPR001005SANT/Myb domain
PfamPF002491.2E-1567111IPR001005SANT/Myb domain
CDDcd001679.11E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGRSPSSDEN GVKKGPWTPE EDQKLVQHIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SQDEEQTILR LHSILGNKWS AIATHLPGRT DNEIKNFWNT HMKKKLIQMG  120
FDPMTHQPRT DLFSNLPQLL ILANLKNILE KHSLDEHALR LQAEASQLAK HQFLHHLLQS  180
PTQSQNHTHH NNNPNAADLE AFNNLLMINS VPDLLPNYNI LENHPNIKLS QQVVEDNNSQ  240
PLHHDTTLLS NIVDPPQQEV LFSSQPSLNN SGIALSELDD ASWFLSSLSS SSNIPVPNLT  300
DHETASVNGD ASSCTTSSQG NGTAASSYWP SHDLFLNGDS FLHEIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-291411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00180DAPTransfer from AT1G34670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015885388.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015885388.10.0transcription factor MYB93
SwissprotQ9S9Z21e-103MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A067KYV41e-126A0A067KYV4_JATCU; MYB family protein
TrEMBLA0A2C9U2061e-126A0A2C9U206_MANES; Uncharacterized protein
STRINGcassava4.1_027612m1e-127(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-101myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]