PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015885426.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 109aa    MW: 12639.3 Da    PI: 9.5166
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015885426.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.19.9e-119100895
                     -HHHHTT-EE--HHH.HTT...---..--SEEEEEE.TTS-EEEEEE.......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   8 sdvlksgrlvlpkkfaeeh...ggkkeesktltled.esgrsWevkliy.....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     s +   +r+v+p  f + +   +    ++ ++t++   +g ++++ l++     +++++ ++ ++GW++Fv++ng+ +gD + F  d+ +++e+v
  XP_015885426.1   9 SQNDFASRFVVPTAFHRLIsgcD----GGAEITVRAyDTGVRYDFVLSVrtgerDRYPKPVFQQRGWQRFVRENGVLTGDEIRFWKDE-QTGEFV 98 
                     333444579******98886331....4556777776699*******99655555555559999*******************99333.666556 PP

                     EE CS
              B3  94 vk 95 
                     ++
  XP_015885426.1  99 IR 100
                     55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.8962105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-9499IPR015300DNA-binding pseudobarrel domain
CDDcd100175.47E-136100No hitNo description
SuperFamilySSF1019362.16E-10699IPR015300DNA-binding pseudobarrel domain
PfamPF023625.5E-81199IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MAVLSKVVSQ NDFASRFVVP TAFHRLISGC DGGAEITVRA YDTGVRYDFV LSVRTGERDR  60
YPKPVFQQRG WQRFVRENGV LTGDEIRFWK DEQTGEFVIR SVRPYINYL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015885426.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-