PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015885454.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Protein Properties

Length: 229aa MW: 25876.1 Da PI: 10.3648

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015885454.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.5	7.5e-16	130	219	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k ++ps+v+ +l lp +f++ + ++k ++ +tl de+g+++ + rk++ l++GWk+F a++L +gD ++F+l++ s f +v XP_015885454.1 130 FIKSMLPSHVTGGFWLGLPVHFCKVN-LPK-RDEVMTLIDEDGNEYPTIYLARKTG----LSGGWKGFSVAHELVDGDALIFQLVRPSAF--KVY 216 89*******************655.555.5569***********656665....**********************998999..777 PP EE- CS B3 96 vfr 98 ++r XP_015885454.1 217 IVR 219 766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.14E-24	124	221	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.2E-19	124	221	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.75E-26	128	219	No hit	No description
SMART	SM01019	8.1E-24	130	221	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.097	130	221	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.0E-13	130	219	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MVVAKPKVSY EECRRKRLEE NKKRMEALNL PKIAQSLRNS LTPKPSPMKS VKKPRTLEKE 60 VVVVRRSSRV ANLPAPVYKE VVIDRVLIPR RISKHRDLSN RVYASDEARA AAIEIAEKLQ 120 SGLEPQYPNF IKSMLPSHVT GGFWLGLPVH FCKVNLPKRD EVMTLIDEDG NEYPTIYLAR 180 KTGLSGGWKG FSVAHELVDG DALIFQLVRP SAFKVYIVRV NGDGQDNQS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015885454.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015885454.1	1e-169	B3 domain-containing protein At5g42700-like
Refseq	XP_024930391.1	1e-169	B3 domain-containing protein At5g42700-like
Swissprot	Q9FMZ4	1e-77	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A2P5ASS8	1e-132	A0A2P5ASS8_PARAD; B3 DNA binding domain containing protein
STRING	EOY14512	1e-125	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3336	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	2e-69	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]