PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015885755.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MIKC_MADS
Protein Properties Length: 190aa    MW: 22287.4 Da    PI: 8.3206
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015885755.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.91.1e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++nrqvt++kRrngi+KKA+E+ vLCda+v++iifss+gk++ y+s
  XP_015885755.1  9 KRIENSTNRQVTYTKRRNGIIKKAKEITVLCDAKVSLIIFSSSGKMQQYCS 59
                    79***********************************************96 PP
2K-box46.41.7e-16881533398
           K-box  33 reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                        Rhl Ged++sL+++eL+ +e++L+k+l +iR+k  e++ +  e+  + e+e+++   +L++k 
  XP_015885755.1  88 IYCRHLNGEDITSLNHRELMAIEDALDKGLASIRDKEVEVINNIRENGEMLEEEHKQLRYRLHQKE 153
                     567************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.9E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.903161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-34289IPR002100Transcription factor, MADS-box
CDDcd002651.20E-39280No hitNo description
PRINTSPR004042.2E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.3E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.74669155IPR002487Transcription factor, K-box
PfamPF014869.9E-1281149IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT YTKRRNGIIK KAKEITVLCD AKVSLIIFSS SGKMQQYCSP  60
STTLVDILDN YHKQSGKRLW DAKHEVCIYC RHLNGEDITS LNHRELMAIE DALDKGLASI  120
RDKEVEVINN IRENGEMLEE EHKQLRYRLH QKEIELEEKV REMDINGYYN SHMPFAFRVQ  180
PNQPNLQERI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-17159159MEF2 CHIMERA
6byy_B2e-17159159MEF2 CHIMERA
6byy_C2e-17159159MEF2 CHIMERA
6byy_D2e-17159159MEF2 CHIMERA
6bz1_A2e-17159159MEF2 CHIMERA
6bz1_B2e-17159159MEF2 CHIMERA
6bz1_C2e-17159159MEF2 CHIMERA
6bz1_D2e-17159159MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015885755.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015885755.11e-140floral homeotic protein PMADS 2
SwissprotQ0HA253e-89MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA0A346Q0432e-91A0A346Q043_9ROSA; Pistillata
STRINGXP_008219575.14e-93(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-70MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]