PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015885983.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 247aa    MW: 27114.7 Da    PI: 7.8931
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015885983.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.2e-145198254
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    +++h+e+ErrRR+riN  +++Lr llP+      +K +Ka+ L ++v+++k+L
  XP_015885983.1 51 CKSHKEAERRRRQRINAHLSTLRALLPNT-----TKTDKASLLAEVVHHVKEL 98
                    789*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.30E-1447101No hitNo description
PROSITE profilePS5088816.0054998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-115198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-1353101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-1453111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-1355104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550212.52E-5149214No hitNo description
Gene3DG3DSA:3.30.70.2602.8E-7150211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MLPFQKFYGF ESWSGGLVQQ PDSVADFMDG GDSLLSSAST KVEAARSVEA CKSHKEAERR  60
RRQRINAHLS TLRALLPNTT KTDKASLLAE VVHHVKELRK QAADVALHDR YLICGKETTG  120
TELEPKPWPF PGESDEATLS YCDAGFVKAT LCCEDRPGLN GDLMRAIRSV RATMVRAEMT  180
TVGGRAKNVV VLEWASGSGQ DEVRTLKRAL KAVVENRVSG SGLGQMVSGN KRPRVYESFS  240
EGEDELI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015885983.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015885983.10.0transcription factor bHLH30-like isoform X2
RefseqXP_015885984.10.0transcription factor bHLH30-like isoform X1
TrEMBLA0A2I4H5L31e-101A0A2I4H5L3_JUGRE; transcription factor bHLH106-like isoform X3
TrEMBLW9RXF41e-102W9RXF4_9ROSA; Uncharacterized protein
STRINGXP_010107684.11e-102(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114412834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-34bHLH family protein