PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015886187.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 236aa    MW: 27550.4 Da    PI: 9.0936
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015886187.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.32.4e-12118204379
                     EE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-E CS
              B3   3 kvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesg...rsWevkliyrkksgryvltkGW.keFvkangLkegDf 79 
                     k l++sdv+ ++rl+l  + ae++        + ++  ++t+++ d++        +kl  +k+s++yvl+kGW keFvk  +Lk+gD 
  XP_015886187.1 118 KDLMSSDVGHLSRLMLKSHWAEKYflphldikQVESDDGVTIKVFDSDThseHDLAFKL--WKSSNSYVLKKGWvKEFVKRRNLKTGDQ 204
                     7899********************99999887444447899999997776445556666..*************889***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-14114207IPR015300DNA-binding pseudobarrel domain
CDDcd100174.21E-14114226No hitNo description
Gene3DG3DSA:2.40.330.103.8E-15116205IPR015300DNA-binding pseudobarrel domain
PfamPF023627.4E-9118204IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MENRLRNQEE KCADESSHYQ ISPPESSRCS TSITTLILST EDLNLSLWFS TNNNNKRKLT  60
TQNHPTLPKR KKFVSDSDYA MALNLWRMRN YSKQDMAEED SLGVTTKLSV YDPWRMTKDL  120
MSSDVGHLSR LMLKSHWAEK YFLPHLDIKQ VESDDGVTIK VFDSDTHSEH DLAFKLWKSS  180
NSYVLKKGWV KEFVKRRNLK TGDQIGMFCH VPLMDDPQSM LKIYFCVLKR AQSKQN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15571KRKLTTQNHPTLPKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015886187.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015886187.11e-177B3 domain-containing protein At2g33720-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF5791221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.18e-30B3 family protein