PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015886306.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 204aa    MW: 23274.9 Da    PI: 9.61
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015886306.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.8e-0933100755
                     HHHHHHHHHHHHHHHHHHCTSCC.C.....................TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.as..................kapskKlsKaeiLekAveYIksLq 55 
                      +ErrRR+++++++ +Lr l+P                        +s  ++Ka+i e A+ YI +Lq
  XP_015886306.1  33 HAERRRRQKLRDRLLKLRALVPIiTNattlnlflnllhipnlpfLLSSLFMNKATIIEDAITYIEELQ 100
                     79*********************6669****************9999999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-1219110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.3472699IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-731100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-732105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-1233104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MDELSIDRNG SNGGRMGRRR LNEDTEFKSK NLHAERRRRQ KLRDRLLKLR ALVPIITNAT  60
TLNLFLNLLH IPNLPFLLSS LFMNKATIIE DAITYIEELQ QTVDTLTNQL SDNKSSFEEG  120
ADPTKEEIHV AEGMKKFGIQ EEVNVSRICE NKLWIKMVFE KKRGRLIKLL EAMSTLGLEL  180
TDTAVTTSKG AMLVTSCVEV RKTN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11738RRRLNEDTEFKSKNLHAERRRR
21740RRRLNEDTEFKSKNLHAERRRRQK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015886306.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024927528.11e-108transcription factor DYT1
TrEMBLA0A251PGJ11e-63A0A251PGJ1_PRUPE; Uncharacterized protein
STRINGXP_008225011.13e-71(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55102948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.16e-24bHLH family protein