PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015886444.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family Trihelix
Protein Properties Length: 636aa    MW: 70705.3 Da    PI: 5.3996
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015886444.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix97.21.4e-3069153187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+laL+++r++m+ ++r++ lk+plWe+vs+km++ g++rs+k+Ckek+en+ k++k++k+g+ ++++++  t+++fdqlea
  XP_015886444.1  69 RWPRQETLALLKIRSDMDATFRDSTLKGPLWEDVSRKMAALGYNRSAKKCKEKFENVYKYHKRTKDGRTGKSEGK--TYRFFDQLEA 153
                     8********************************************************************975544..6*******85 PP
2trihelix105.34.4e-33422506186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+k ev+aLi++r++++ +++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+k+++kkr se+s+tcpyf+ l+
  XP_015886444.1 422 RWPKAEVQALIQLRTNLDLKYQDNGPKGPLWEEISAGMRRMGYNRSAKRCKEKWENINKYFKKVKDNNKKR-SEDSKTCPYFHLLD 506
                     8*********************************************************************8.89999******998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.07362126IPR017877Myb-like domain
SMARTSM007170.00166128IPR001005SANT/Myb domain
PfamPF138373.0E-2068153No hitNo description
CDDcd122031.62E-2568133No hitNo description
PROSITE profilePS500907.491415479IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.6E-5417478IPR009057Homeodomain-like
SMARTSM007173.1E-4419481IPR001005SANT/Myb domain
CDDcd122031.54E-28421486No hitNo description
PfamPF138375.1E-23421508No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MGDASLAAES CRADDVVVVE AAEVAVVAAG EIQEGGGGGE LGGDGGVSNS GEDDKGRSEE  60
GDRNYAGNRW PRQETLALLK IRSDMDATFR DSTLKGPLWE DVSRKMAALG YNRSAKKCKE  120
KFENVYKYHK RTKDGRTGKS EGKTYRFFDQ LEAFGTHHHS NNPPLSNKPP YHPPPPQVIS  180
TSTTPWTTNQ APTISHIFAP SPLQNITNPT INIPPLPPTP TNPTSSLPLH TKSPNPSLTT  240
VPLASSNLFS SSTSSSTASD EEFQRRHKRK RKWKEFFRRL TKEVLRKQEE LQMKFLETVE  300
KCEHDRMVRE EAWRLQETAR INREHEILVQ ERSTAAAKDA AVIAFLQKVS GGGAGGQHNT  360
NGEVRFNIMS LPPPQPPAPQ APPSALPKPQ PASAVSANLE ISKLDYNETN NNAAALSIST  420
SRWPKAEVQA LIQLRTNLDL KYQDNGPKGP LWEEISAGMR RMGYNRSAKR CKEKWENINK  480
YFKKVKDNNK KRSEDSKTCP YFHLLDALYR EKNIADNINI NSNSNISCNN IVVADQNGNG  540
KVEKPVEAAN IGMEPLMVQP ERQWPLQEDK NQLDSVMEDI GVRGNADPNH EEEEDDDDDN  600
GDDDGEDDDG DSTEDDAERG GYEIVTNKQS SMDMVE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263270QRRHKRKR
2264279RRHKRKRKWKEFFRRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015886444.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4334762e-48AM433476.2 Vitis vinifera contig VV78X257449.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015886444.10.0trihelix transcription factor GT-2-like
SwissprotQ391171e-140TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A1R3IV020.0A0A1R3IV02_COCAP; Uncharacterized protein
STRINGXP_006434455.11e-174(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-75Trihelix family protein