PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015886445.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family Trihelix
Protein Properties Length: 479aa    MW: 52569.7 Da    PI: 5.4267
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015886445.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix110.79e-35301386187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k ev+aLi++r++++ +++++  k+plWee+s++mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  XP_015886445.1 301 RWPKMEVQALINLRTSLDPKYQESGPKGPLWEEISAAMRKIGYNRSAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 386
                     8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.5E-5298360IPR001005SANT/Myb domain
PROSITE profilePS500907.306300358IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.2E-4300357IPR009057Homeodomain-like
PfamPF138374.5E-23300387No hitNo description
CDDcd122037.37E-31300365No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MAVVSASSTL ATMSAVGGGV TANVVVPSHQ STVPSATHPL MSISSQPSST TTTPTINLTF  60
SSFPPTNPTI VPPPPQPVLI QPSSATTTTT TTNPTNIPSS FHSISADLYS TSSSTSSDEE  120
VLEGRRKRKR KWKDFFERLM KEVIRKQEEL QKKFLEAIEK REQERAVREE AWRMQEMARI  180
NREREILAQE RSIAAAKDTA VMAFLQKMSE QQNQNPNPGQ QPPQNIALQP PTPLAVLPIS  240
VPPVQSAPTA PSAAAAAAAV TVQASAAPSA PAAAAPPPPR PQPASAADNN GENLMGTSSS  300
RWPKMEVQAL INLRTSLDPK YQESGPKGPL WEEISAAMRK IGYNRSAKRC KEKWENINKY  360
FKKVKESNKK RPEDSKTCPY FHQLDALYRE KNKFENSPNQ IKPENTIPLM VRPEQQWPPQ  420
QQDQNHPDSG MDDMESDPMD QNEDEDDKDE DEEEDGGGGN YELVANRPPP ASASVSAAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124129RRKRKR
2124130RRKRKRK
3125130RKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015886445.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4334763e-53AM433476.2 Vitis vinifera contig VV78X257449.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015886445.20.0trihelix transcription factor GT-2-like, partial
TrEMBLA0A2I4H6601e-148A0A2I4H660_JUGRE; trihelix transcription factor GT-2-like
STRINGXP_006473053.11e-138(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.19e-60Trihelix family protein