PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015886948.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 209aa MW: 24157.6 Da PI: 8.7783

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015886948.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.6	1.6e-26	44	132	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA+++GF +r+ + ++s+r+g+i r++ C+keg+ + + k r++r++tr gCka+++vk +k+gkw++tk++++HnH+l+ XP_015886948.1 44 FYDEYARRLGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFGPVRKPRPSTREGCKAMIHVKYDKSGKWVITKFVKDHNHPLV 132 9************************************99999998**************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-24	44	132	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MDSDEGTVAV ESSSIHGLVT YGGDTIVEPY EGMQFDSEDA AKIFYDEYAR RLGFVMRVMS 60 CRRSERDGRI LARRLGCNKE GYCVSIRGKF GPVRKPRPST REGCKAMIHV KYDKSGKWVI 120 TKFVKDHNHP LVVSPREARQ TMDEKDKKIQ ELTTELRNKK RLCTTYQEQL TTFMKIVEEH 180 SDLLSKKVQN VVSNLKEFEC IDQELSQHR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015886948.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015886948.1	1e-156	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_024931442.1	1e-156	protein FAR1-RELATED SEQUENCE 5-like isoform X2
Swissprot	Q9SZL8	2e-25	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A251R2Y8	1e-136	A0A251R2Y8_PRUPE; Uncharacterized protein
TrEMBL	W9RFJ0	1e-136	W9RFJ0_9ROSA; Uncharacterized protein
STRING	XP_008222477.1	1e-137	(Prunus mume)
STRING	XP_010098449.1	1e-137	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-111	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]