PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015886954.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 202aa MW: 23553.7 Da PI: 9.1566

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015886954.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.1	7.9e-20	42	125	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA+++GF +r+ +s+ks+r+g+i++r + C g++++++k +++++ r C+a++ +k++k+g+w+v k++ +H H+l+ XP_015886954.1 42 FYDDYARQTGFVTRVLSSRKSERDGSIISRGLGCR--GFSDNQTKV---QEQKKHRRREACTAMILLKRDKTGRWVVRKFVRDHIHPLV 125 9*******************************7..555554444...4477778899**************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-17	42	125	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MDEENGMIET LTRGESSICE AGNVEEPSEG MLFESEEAAR GFYDDYARQT GFVTRVLSSR 60 KSERDGSIIS RGLGCRGFSD NQTKVQEQKK HRRREACTAM ILLKRDKTGR WVVRKFVRDH 120 IHPLVVQLQT SRRTLDEKDK KIQELSAELR MKKRLSATYR EQLLAFMKDV EEHNGHLSTK 180 VQLIYDNLRE LETKTKEILH HR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015886954.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015886954.2	1e-148	protein FAR1-RELATED SEQUENCE 2-like
Refseq	XP_015886990.2	1e-148	protein FAR1-RELATED SEQUENCE 2-like
Swissprot	Q9SZL8	3e-16	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2P5ESZ0	2e-99	A0A2P5ESZ0_TREOI; FHY3/FAR1 family
STRING	VIT_05s0102g00470.t01	7e-94	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	6e-59	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]