PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015886978.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bZIP

Protein Properties

Length: 111aa MW: 12839.8 Da PI: 10.8479

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015886978.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.1	2.5e-15	26	88	2	64
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 + ++errkq+NRe+A+rsR R+++e+ +L+ k++ L +e + L+ + + +ke+ klk+e++ XP_015886978.1 26 HDQRKERRKQSNRESAKRSRCRRQEECRKLQAKAEDLAKETSNLRAGIMRVSKECRKLKKENK 88 57799*******************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.7E-13	22	85	No hit	No description
SMART	SM00338	1.0E-11	25	89	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.783	27	90	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.5E-13	27	88	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.5E-7	29	84	No hit	No description
CDD	cd14702	1.04E-10	30	81	No hit	No description
PROSITE pattern	PS00036	0	32	47	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MVQTKSNTGI ASNWSSTKSI LAKEEHDQRK ERRKQSNRES AKRSRCRRQE ECRKLQAKAE 60 DLAKETSNLR AGIMRVSKEC RKLKKENKSI IVSHLNLTDM CFVVVGKYLN S

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269\|PubMed:1373374, ECO:0000269\|PubMed:22718771}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015886978.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015867010.1	2e-54	G-box-binding factor 1-like
Refseq	XP_024924421.1	2e-54	G-box-binding factor 1-like
Refseq	XP_024931448.1	4e-57	G-box-binding factor 1-like
Swissprot	P42774	5e-18	GBF1_ARATH; G-box-binding factor 1
TrEMBL	A0A2N9I8H8	1e-18	A0A2N9I8H8_FAGSY; Uncharacterized protein
STRING	scaffold_700433.1	1e-16	(Arabidopsis lyrata)
STRING	XP_010432144.1	1e-16	(Camelina sativa)
STRING	XP_010446753.1	1e-16	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15757	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36730.2	2e-20	G-box binding factor 1

Publications ? help Back to Top
Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development. Mol Plant, 2013. 6(6): p. 1758-68 [PMID:24157607] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Karumuri S,Bandopadhyay R In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana. Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9 [PMID:25630103] Smykowski A,Zimmermann P,Zentgraf U CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis. Plant Physiol., 2016. 170(2): p. 1164-7 [PMID:26826725] Smykowski A,Fischer SM,Zentgraf U Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1. Plants (Basel), 2015. 4(3): p. 691-709 [PMID:27135347] Giri MK, et al. GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana. Plant J., 2017. 91(5): p. 802-815 [PMID:28622438]