PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015886981.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family FAR1
Protein Properties Length: 258aa    MW: 29814.4 Da    PI: 6.4291
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015886981.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1851.2e-2678168190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fY +Y++++GF+vr++++++s+ n++++ ++fvCskeg+r+++   ++++    + + tr gC+a++++ +++  kw+vtk+++eHnH+l+
  XP_015886981.1  78 EFYVAYGRRTGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVYRKDR-VlpPPPITREGCQAMIRLALRDGMKWVVTKFVKEHNHKLM 168
                     6******************************************99883333.234899********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-2378168IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDNQSGHEFD SDESDLDIQA ETFKKHEEID DPLSQNLGLC IGDGEKAAEQ SIGNLAMNAE  60
TLEPYIGMEF NSRDEAREFY VAYGRRTGFT VRIHHNRRSR VNNQVIGQDF VCSKEGFRAK  120
KYVYRKDRVL PPPPITREGC QAMIRLALRD GMKWVVTKFV KEHNHKLMSP SKVPWRGSGK  180
HLVSEDEKDK RIRELSLELY NERQKCKRRC AAYEEQLNAI LKDLEKHTEH ISNKVADIVQ  240
SIKTIEEEQS EDSDSGWS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015886981.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015886981.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLM5XFI81e-160M5XFI8_PRUPE; Uncharacterized protein
STRINGEMJ248821e-161(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88613044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.15e-42FAR1 family protein