PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015886995.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 248aa MW: 28417.1 Da PI: 5.2467

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015886995.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.5	3.4e-26	80	170	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY eYAk++GF++r+++ ++s +n i+ r+fvCs+eg+r+ +++ +++ +r+ tr gCka++++ ++ gkw vtk++++HnH+l+ XP_015886995.1 80 NFYYEYAKHTGFTIRTNRIRHSLKNMAIIGRDFVCSREGFRAAKHTLrKDRVLPPRPITREGCKAMIRLAARDGGKWIVTKFVHDHNHKLM 170 6***************************************9998822333349********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.7E-24	80	170	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MTGAASGHDF LDSDGGSDDE TFEKFCEHEA VEDELLPRCS LNNDVNDCLI PKELHVEGLS 60 AESLEPYAGM TFPSLEDARN FYYEYAKHTG FTIRTNRIRH SLKNMAIIGR DFVCSREGFR 120 AAKHTLRKDR VLPPRPITRE GCKAMIRLAA RDGGKWIVTK FVHDHNHKLM TSCKFSGELP 180 IVNILSEEEK DKKIQDLYDE LQHERQRSVA LQHQLSMILE DLEEHAEFMS IRVEDIINSI 240 KEIELGDL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015886995.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015886995.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	F6HYS5	1e-133	F6HYS5_VITVI; Uncharacterized protein
STRING	VIT_05s0102g00440.t01	1e-134	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15728	10	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	6e-43	FAR1 family protein