PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015887131.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

LBD

Protein Properties

Length: 155aa MW: 17658.8 Da PI: 8.8512

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015887131.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	111.9	4.3e-35	25	123	3	101
DUF260 3 aaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +aCk+ rrkC +dC++ pyfp+++p+++a+vh+++Ga+ + ++ ++lp + r +a++sl+yeA++r +dPvyG++g+i++l++q++++++++a++ XP_015887131.1 25 NACKYSRRKCRSDCIFYPYFPSNNPERYACVHQIYGANSIRNIFQQLPIHLRAEAAESLYYEAKCRFEDPVYGCAGIISQLHKQIRNAESQIAKV 119 8*********************************************************************************************9 PP DUF260 98 keel 101 ++++ XP_015887131.1 120 RAQI 123 9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.374	22	123	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.0E-34	25	120	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MDGNRLNSLQ YSFGNFCRPS RVAANACKYS RRKCRSDCIF YPYFPSNNPE RYACVHQIYG 60 ANSIRNIFQQ LPIHLRAEAA ESLYYEAKCR FEDPVYGCAG IISQLHKQIR NAESQIAKVR 120 AQIAFLNSNA HEMDSNTNNL IQGHSNIGQS QFQAP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-27	26	116	14	104	LOB family transfactor Ramosa2.1
5ly0_B	1e-27	26	116	14	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015887131.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015887131.1	1e-112	LOB domain-containing protein 24-like
Swissprot	P59468	1e-40	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A059DJZ9	5e-50	A0A059DJZ9_EUCGR; Uncharacterized protein
STRING	XP_010025110.1	8e-51	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3697	30	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	5e-43	LOB domain-containing protein 24