PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015887148.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

LBD

Protein Properties

Length: 89aa MW: 9968.2 Da PI: 6.5011

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015887148.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	53.3	7.8e-17	1	57	45	101
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +l++lp + r +a++sl+yeA++r++dPvyG++g+i++l+qq++++++++a++++++ XP_015887148.1 1 MLQQLPIHLRVEAAESLYYEAKCRIEDPVYGCAGIISQLHQQIHNAESQVAKIRAQI 57 7999***********************************************999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.5E-14	1	54	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	11.034	1	57	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 89 aa Download sequence Send to blast
MLQQLPIHLR VEAAESLYYE AKCRIEDPVY GCAGIISQLH QQIHNAESQV AKIRAQIAFL 60 NSNAHEMESN TNNLIQGNSK IGQSQFQTS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015887148.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024931664.1	6e-59	LOB domain-containing protein 24-like
Swissprot	P59468	6e-18	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A059DJZ9	3e-28	A0A059DJZ9_EUCGR; Uncharacterized protein
STRING	XP_010025110.1	5e-29	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3697	30	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	3e-20	LOB domain-containing protein 24