PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015887525.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 944aa    MW: 105827 Da    PI: 5.6252
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015887525.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.92.4e-1037126499
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +++  ++l s+ l +pkkf++ +g  + +    t+  ++g +W++ l  +k  g++ + +GW+ F +    +    +vF++++ s+f  +v++++
  XP_015887525.1  37 KMIIQSTLDSKKLKIPKKFVQIYGRGPSS--IATISLPDGSKWKLGL--EKANGKVSFVDGWQTFTRHYSGRKAYYLVFRYEEFSKF--HVHILD 125
                     444555666667********888665544..45556688********..*******************************9765888..999998 PP

                     S CS
              B3  99 k 99 
                     +
  XP_015887525.1 126 A 126
                     6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-1630127IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-1531127IPR015300DNA-binding pseudobarrel domain
CDDcd100173.31E-1133125No hitNo description
PROSITE profilePS5086311.13834127IPR003340B3 DNA binding domain
SMARTSM010191.7E-735127IPR003340B3 DNA binding domain
Gene3DG3DSA:3.80.10.101.9E-47256451IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520474.87E-46257546No hitNo description
SMARTSM0036956265290IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514504.786267288IPR001611Leucine-rich repeat
SMARTSM00369180314338IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514504.747316337IPR001611Leucine-rich repeat
SMARTSM00369120339362IPR003591Leucine-rich repeat, typical subtype
PfamPF005600.68341363IPR001611Leucine-rich repeat
PROSITE profilePS514505.818341364IPR001611Leucine-rich repeat
SMARTSM0036942363387IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514506.018365387IPR001611Leucine-rich repeat
PROSITE profilePS514504.555388409IPR001611Leucine-rich repeat
PROSITE profilePS514505.117412434IPR001611Leucine-rich repeat
SMARTSM00365670434455No hitNo description
PROSITE profilePS514505.656436457IPR001611Leucine-rich repeat
Gene3DG3DSA:3.80.10.102.5E-12454547IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM00369170459484IPR003591Leucine-rich repeat, typical subtype
SMARTSM0036533459479No hitNo description
PROSITE profilePS514506.819461481IPR001611Leucine-rich repeat
PROSITE profilePS514505.009484505IPR001611Leucine-rich repeat
SMARTSM00365580505520No hitNo description
SMARTSM00369220507529IPR003591Leucine-rich repeat, typical subtype
PfamPF005600.77507526IPR001611Leucine-rich repeat
PROSITE profilePS514506.757507529IPR001611Leucine-rich repeat
PROSITE profilePS514504.562534555IPR001611Leucine-rich repeat
Gene3DG3DSA:3.80.10.105.1E-64557732IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM00369370603625IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514504.932604626IPR001611Leucine-rich repeat
SuperFamilySSF520586.46E-49604732IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM0036916628652IPR003591Leucine-rich repeat, typical subtype
SMARTSM00365170628654No hitNo description
PfamPF138551.1E-8630689IPR001611Leucine-rich repeat
PROSITE profilePS514506.318630653IPR001611Leucine-rich repeat
PRINTSPR000194.2E-5631644No hitNo description
SMARTSM00369330653675IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514507.319654675IPR001611Leucine-rich repeat
Gene3DG3DSA:3.80.10.105.1E-64780886IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520586.46E-49780888IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM00369310798821IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514505.656800822IPR001611Leucine-rich repeat
PfamPF138556.1E-8801859IPR001611Leucine-rich repeat
PRINTSPR000194.2E-5822835No hitNo description
SMARTSM0036920822846IPR003591Leucine-rich repeat, typical subtype
SMARTSM0036520822848No hitNo description
PROSITE profilePS514506.896824847IPR001611Leucine-rich repeat
PROSITE profilePS514505.64848870IPR001611Leucine-rich repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 944 aa     Download sequence    Send to blast
MAAKQRSGRG NVGPSRSRNT IHEPNPSKTK PVPHFSKMII QSTLDSKKLK IPKKFVQIYG  60
RGPSSIATIS LPDGSKWKLG LEKANGKVSF VDGWQTFTRH YSGRKAYYLV FRYEEFSKFH  120
VHILDASTTE IDHSYNDQNS GDSEDQEVEA TDDNETDDDD DDDDDDDEED EEEEGDDLEF  180
NPCFSYKRTI IINESIVLRC RRRKKIHSSG DRLLAKREDG HMFISQNFCR TKISKKSVWA  240
TEHDVDDEDD DYSGGGPIPP SVRNLSELTY LQLSSNYFNG HELPSTLGNL AKLTFLALDS  300
CGFSGEIPPS LGNLTRLGYL ILSNNGFSGP IPANSLGNLK QLQSLNLSFN SFSGQIPSSL  360
GNLTVLNFLD LSFNNLGGTI PSFLFMLSLN GLYLRNNQFR GSLSIQNISY SQLEFLDLGV  420
NKLNGQIPQS MFKMVNLVHI SLCFNDLSGL VELSNFSKLV KLQVLLLSHN SLSITNLSTT  480
ELPKFQTLAL GSCNISEFPD FLNTQDQLEV LDLSDNRIED QIPNWLWGAI GKMKLDILGL  540
KNNKLHGSLI VPPLSISYFD ISNNNFSGGI HPSFQKWSNL KLLEISNNHF GGTVPRWLCN  600
FSSSLEALNL QRNNFEGSLH QMFTCGGLHN LKFLDLSHNQ FQGQLPHSLA NCRELQILNL  660
GHNMISDIFP FWLQNLPELQ VLVLRSNKFY GPIWHPNKLS GFIKLGFVDL AFNNFNGTLP  720
SEYFRNWGGM MVKDFNQKNP YFTYLTIVSG KNGVLFYVTE VMNKGVEMEN TMISAASTNI  780
DLSNNKFDGE IPSSIGDLQA LVWLNLSSNR FTGNIPSSIG NMKELESLDL SNNKLIGRIP  840
QQLTNLSFLA YLNLSQNQLT GPIPKGGQLD TFSSSSFEEN LGLCGSQLLS KKCDAKETPI  900
SDQTKDVESE DCLTWKAFNS KDRRKNAEEI RIFTVVIDKW AIDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4mn8_A1e-6525689722772LRR receptor-like serine/threonine-protein kinase FLS2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015887525.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024931260.10.0receptor-like protein 33
TrEMBLA0A2P5EVL20.0A0A2P5EVL2_TREOI; LRR domain containing protein
STRINGXP_010107232.11e-176(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-22B3 family protein