PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015887547.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 247aa    MW: 28477.2 Da    PI: 8.4773
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015887547.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.81.3e-151562421196
                     HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                       ++ + +p +f++++ ++  e +tl+  ++  ++W v+++   k+++ + +++GW+ F  +n L+egD++vF+l+++++  +++++
  XP_015887547.1 156 EHHNYMNVPAEFIKKYTKNCSEYRTLKTSTSGKKQWLVRCTPIHKKRWpMKISRGWSAFKTDNTLREGDVCVFELMKKNGILFKISI 242
                     5678899*********98888888999888888*******88777777899***********************9986665455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-20139245IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-18141244IPR015300DNA-binding pseudobarrel domain
CDDcd100173.06E-15144244No hitNo description
PROSITE profilePS5086312.266146246IPR003340B3 DNA binding domain
SMARTSM010195.0E-8146246IPR003340B3 DNA binding domain
PfamPF023627.9E-13148243IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MHSSGDRLLA KREDGQMFIS QNFFHTKISK KSVRATEHDV DDEDDDYSGG GDGGGDDQNN  60
DDEEEVVVDF ELNPCFSSNR TIFINESVIQ QGRKRKKMHS LGDHLSAKDE DGQVFISQNF  120
SQIKISKENE RAFLAAKKCK RTNPCFMVVL QKCEIEHHNY MNVPAEFIKK YTKNCSEYRT  180
LKTSTSGKKQ WLVRCTPIHK KRWPMKISRG WSAFKTDNTL REGDVCVFEL MKKNGILFKI  240
SIYRAAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1712624729144B3 domain-containing transcription factor VRN1
4i1k_B2e-1712624729144B3 domain-containing transcription factor VRN1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19296RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015887547.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015887547.10.0B3 domain-containing transcription factor VRN1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-19related to vernalization1 1