PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015887823.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bHLH

Protein Properties

Length: 243aa MW: 28608.7 Da PI: 7.5811

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015887823.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.7	7.5e-07	89	136	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er RR++ +++++ L ++lP +K++K +i+ A+ +k+Lq XP_015887823.1 89 YRHMMCERMRREKQKQSYSALHSVLPIG-----TKNDKNSIVHVATMKVKQLQ 136 568999********************97.....79999999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.54E-11	77	149	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.27E-5	84	137	No hit	No description
PROSITE profile	PS50888	10.309	86	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-6	91	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MDMFFDHDLE SHMNSFWYET LPVNQSAFVQ YNTSTNRPRS EFGQQENHGC ISNVNTMNMN 60 KRMIEFWKRI CPRRIGNGTE QELERERCYR HMMCERMRRE KQKQSYSALH SVLPIGTKND 120 KNSIVHVATM KVKQLQRYKE ELMRQNMELE QVLELKEKEK AKGTMINVMV NNPTSGIDSM 180 VEALKFMKQN RLEVTNIQSV FSPEVFSAQM EVQTEIGGAE VEEALKYTLE EAERKFHFGF 240 PGK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015887823.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015887823.1	0.0	transcription factor bHLH92
TrEMBL	A0A2P5ECN6	3e-71	A0A2P5ECN6_TREOI; Basic helix-loop-helix transcription factor

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12572	27	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	1e-38	bHLH family protein