PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015887956.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 860aa    MW: 94176.7 Da    PI: 6.765
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015887956.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.7e-18314413198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ +  e++
  XP_015887956.1 314 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDAKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIVTFSRLE-PEGK 406
                     89**************************555566778***************9989999999***9.********************766.7777 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     lv+++++
  XP_015887956.1 407 LVMGFRK 413
                     7777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-31310421IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-19311413IPR015300DNA-binding pseudobarrel domain
CDDcd100174.30E-22312413No hitNo description
PROSITE profilePS5086311.321314415IPR003340B3 DNA binding domain
SMARTSM010194.8E-21314415IPR003340B3 DNA binding domain
PfamPF023621.2E-15314413IPR003340B3 DNA binding domain
PROSITE profilePS5105012.804542592IPR011124Zinc finger, CW-type
PfamPF074961.7E-11547589IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 860 aa     Download sequence    Send to blast
MITDQAAAII FPLKDDRCGS AYEEGRFCDS FHLNASGWRS CESCGKGVHC GCIVSSNAFT  60
LLDPGGIECI ACARKNVILS SNTAWPPSLF FHSTLPERLK DLSVKNWSQL AGSGPVPWRQ  120
APSLFGSITP SEMHSRVPYE VDISAAINKL NAGERIGVTS LEKRKIEDFS ERLQNGSLKL  180
GARDALENGT AGRNCEDQIN SCLNLGQQPS SLKEEPSTPQ FGLSVPYASA SETNGQVGAA  240
GSNLRPTPPP MPKQFIGNLH SGVDSPGETQ IRNARPRADA RGRNQLLPRY WPRFTDQELQ  300
QISGDSNSVI TPLFEKMLSA SDAGRIGRLV LPKKCAEAYF PPISQPEGLP LKVQDAKGKE  360
WIFQFRFWPN NNSRMYVLEG VTPCIQSMQL QAGDIVTFSR LEPEGKLVMG FRKASAATPS  420
DQENETNRNG NGVSMQGDAE LADPSSWSKV DKSGYIAKEV LGAKTLISRK RKSSTLGSKS  480
KRLRIENEDM MELKLTWEEA QGLLRPPPNH VPSVVVIEGF EFEEYEDAPI LGKPTIFSTD  540
NMGEKIQWVQ CEDCFKLRKL PADALLPSRW TCSDNSWDPE RSSCSAAQEL TAEELEDLIP  600
QSVSVASKKM KAAKLDSENL EAMEGLDTLA NLAIMGEGES LQSSSQATTK HPRHRPGCSC  660
IVCIQPPSGK GPKHKQSCTC NVCLTVKRRF RTLMMRREKK QSEKEAETTR KKQQVSLPDK  720
FDNESNLTSN TGNSPNQKRE FHDGSDDEPS RMKSSTSPFK GQIDLNIQPE REDELSPGSD  780
SGGIIKFVQD NPARYLRQQR LSSSGGSENS SGNLSQRDGG DAIGDKLNNG INLGRNLHDA  840
SDDHPSSISM KASASTTATG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-652924172127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1467472SRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015887956.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015887956.10.0B3 domain-containing protein Os07g0563300
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A2P5G0Y60.0A0A2P5G0Y6_TREOI; Zinc finger-type transcription factor (Fragment)
STRINGXP_008224939.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77383138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1