PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015887981.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 423aa    MW: 46808.7 Da    PI: 6.8414
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015887981.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.3e-11352397655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L++l P+     +k  s a++L +Av+YIk+Lq
  XP_015887981.1 352 SIAERVRRTRISERMRKLQDLFPEM----DKQTSTADMLDLAVQYIKDLQ 397
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.475346396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14349411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.17E-11350401No hitNo description
Gene3DG3DSA:4.10.280.101.2E-13351409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-11352402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-8352397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MSLAYGPMVN CSEVELRKNQ PEFMDSNFCQ MQQQQNSNLL RYSSAPSSFL ASLLDNGGGG  60
YDDHRYVRPS SPEVDTMLAK FISACNGTDH SGSNGVHQFG ESLAMKQETE DSVPEQNEYS  120
SGSQMMYLSQ AQQVHALHGH NSAGSNLDSS FGVINSTGFE DSMEAKIGVG NRSNLVRQSS  180
SPAGLFSDIN SENGLAATRG FRGYKGEPSS STCTVNNQLN FSFGTPSSSR PLPQISETEN  240
GKLGMSSPEG QRLENGEANN SQYIQDFSNG SWDDSSFHCL KRARDNDGNM FPTSIAMETQ  300
NTDFRNRNYN LTHHLSLPKN FEMPSIQKLL QFQGAAPCKI RAKRGFATHP RSIAERVRRT  360
RISERMRKLQ DLFPEMDKQT STADMLDLAV QYIKDLQKQV KTLNDTKSKC SCSSTQKQYS  420
NAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015887981.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015887981.10.0transcription factor bHLH130-like
TrEMBLM5X1891e-165M5X189_PRUPE; Uncharacterized protein
STRINGEMJ192451e-166(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40053359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.18e-56bHLH family protein