PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015888018.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 160aa    MW: 17984.6 Da    PI: 9.9198
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015888018.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.31.8e-1564145179
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 
                     f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+
  XP_015888018.1  64 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDAKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDI 145
                     89**************************555566778***************9989999999***9.***************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-2560145IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-1661145IPR015300DNA-binding pseudobarrel domain
CDDcd100171.33E-1962145No hitNo description
PfamPF023621.2E-1264145IPR003340B3 DNA binding domain
SMARTSM010195.5E-1064158IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MPKQFIGNLH SGVDSPGETQ IRNARPRADA RGRNQLLPRY WPRFTDQELQ QISGDSNSVI  60
TPLFEKMLSA SDAGRIGRLV LPKKCAEAYF PPISQPEGLP LKVQDAKGKE WIFQFRFWPN  120
NNSRMYVLEG VTPCIQSMQL QAGDIGKHPL SPTMSSIRSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C9e-60421441103B3 domain-containing transcription repressor VAL1
5yzz_C9e-60421441103B3 domain-containing transcription repressor VAL1
5z00_C9e-60421441103B3 domain-containing transcription repressor VAL1
5z00_G9e-60421441103B3 domain-containing transcription repressor VAL1
5z00_K9e-60421441103B3 domain-containing transcription repressor VAL1
5z00_M9e-60421441103B3 domain-containing transcription repressor VAL1
6j9a_A1e-59421442104B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015888018.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015888018.11e-117B3 domain-containing protein Os07g0563300-like
SwissprotQ0D5G46e-77Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A2P5G0Y61e-92A0A2P5G0Y6_TREOI; Zinc finger-type transcription factor (Fragment)
STRINGXP_008224939.11e-90(Prunus mume)
STRINGXP_008349258.14e-91(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1597856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-69HSI2-like 1