PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015888163.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family CPP
Protein Properties Length: 796aa    MW: 87109.5 Da    PI: 6.4556
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015888163.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR51.12.6e-16494532240
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     ++k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk 
  XP_015888163.1 494 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 532
                     689**********************************96 PP
2TCR47.34.1e-15579618140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     ++k+gCnCkks+C kkYCeC++ g+ Cs +C+Ce+CkN  
  XP_015888163.1 579 RHKRGCNCKKSSCTKKYCECYQGGVGCSISCRCEGCKNAF 618
                     589***********************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.6E-18493534IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.01494619IPR005172CRC domain
PfamPF036381.1E-11496531IPR005172CRC domain
SMARTSM011147.6E-16579620IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.0E-11581617IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 796 aa     Download sequence    Send to blast
MDTPERNQIG TPLSKFEDSP VFNYINSLSP IKPVKSLNIT QTFSSLSFAT LPSVFTSPHV  60
SSHRESRFLR RHNSSDPSKR ESSPEIENKV CTNEGVVIDS AHLYNNRGEL NEIGETSVEP  120
QSGHSKFVIE LPRTLKYDCG SPDCDSTPCD ITADCASELI DPSTALVPYV QEASERCSSG  180
GEAHANFQGA CQIGLKKEGN VCDWESLISD AADLLIFNSP GCTEPFKGLI ENSLEPATRF  240
CTSVVAQFPE NDMIDGNRMH VVDPVSVEHH NTEDLSTQPR EACQMTEMEM PQDRLANTNS  300
NKGVVRNPTE IKDNEVEACM AFSCKSVFNL HRGIRRRCLD FEMAGARRKN LDDGSNCSSS  360
ISQSDEKITA NDTQLGSVKP GSDSTRRILP GIGLHLNALA ATSKDYVIIK SESFSSGRQP  420
SLPNTTASIH SPTDSQEPLD KSLILASSER DTDGAENGVL LEDGSQAPAI SEEFNQNSPK  480
KKRRRLENAG EGDSCKRCNC KKSKCLKLYC ECFAAGVYCI EPCSCQDCFN KPIHEDTVLA  540
TRKQIESRNP LAFAPKVIRS SDSVPEFGDE SNKTPASARH KRGCNCKKSS CTKKYCECYQ  600
GGVGCSISCR CEGCKNAFGK KDGSALTGTE AEPEEDETEA SEKSMVDKPL QKIEIQNNEE  660
QNPSSTLPIT PLQASRVPLI PLPLSSKSKP PRSSFFTMPS SSGLYTGQKL GKPNILRSQP  720
RFEKHIQVVP KNQEDEMPEI LRGDSSPNTT GIKTSSPNSK RISPPHCNFG SSPGRRTGRK  780
LILQSIPSFP SLTPRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1649861614120Protein lin-54 homolog
5fd3_B1e-1649861614120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1478485PKKKRRRL
2479484KKKRRR
3481485KRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015888163.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2175868e-49AC217586.1 Populus trichocarpa clone POP025-M11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015888163.10.0protein tesmin/TSO1-like CXC 3
TrEMBLA0A2P5E3850.0A0A2P5E385_PARAD; Lin-54-like protein
STRINGXP_008224266.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.11e-150Tesmin/TSO1-like CXC domain-containing protein