PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015888264.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family FAR1
Protein Properties Length: 759aa    MW: 87522.2 Da    PI: 8.3866
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015888264.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.36.8e-2043118190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fY  YAk++GF++r+ + ++s+++g++ +r+fvCskeg++ +              +rtgC a ++v+++++gkw+++ + ++HnH+l 
  XP_015888264.1  43 EFYTLYAKRTGFKIRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCPALIRVQRRDSGKWVIDLFLKDHNHDLG 118
                     6***************************************876..............589***************************995 PP
2FAR168.31.9e-21198273190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fY++YA ++GF++r+ +  +sk +g+it+r+fvCskeg+++++              r gC a +++k++++g+w+v++l+++HnHel+
  XP_015888264.1 198 QFYQAYAANAGFRIRIGQLFRSKLDGSITSRRFVCSKEGFQHPS--------------RLGCGAFMRIKRQDSGRWVVDRLQKDHNHELN 273
                     6***************************************9994..............789***************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1543118IPR004330FAR1 DNA binding domain
PfamPF031015.5E-17198273IPR004330FAR1 DNA binding domain
PfamPF105511.9E-27373465IPR018289MULE transposase domain
PROSITE profilePS5096610.348635683IPR007527Zinc finger, SWIM-type
PfamPF044342.9E-8640680IPR007527Zinc finger, SWIM-type
SMARTSM005759.7E-7658685IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MVVKAYPVGM VPAMNHVNGE DEGESSLEPY VGLEFDSAED AREFYTLYAK RTGFKIRTGQ  60
LYRSRTDGTV SSRRFVCSKE GFQLNSRTGC PALIRVQRRD SGKWVIDLFL KDHNHDLGPM  120
GENNPPTLQR KISLATTKPV LDVSHRPRIK SVEEIGDGRP CPSGVINAKR LKREGDDMQS  180
KVAPFAGLEF NSANDGYQFY QAYAANAGFR IRIGQLFRSK LDGSITSRRF VCSKEGFQHP  240
SRLGCGAFMR IKRQDSGRWV VDRLQKDHNH ELNYQLEVDK KSPTSSKRLL EEESGGLESE  300
DIFNINSGNL VKRSRENHIG SDWYRVLLEY FQNRQAEDTG FFYAVEVDNG SCMSIFWADG  360
RSRFSCSQFG DTVIFDTSYR KSIYLVPFAT FVGVNHHKQP VLLGCALIAD ESVESFTWLF  420
QTWLRAMSGR RPFSIIADQD KVIQQAIRQV FPGTHHRFSL WQMKAKEREY LNLMDGAFKY  480
EYEKCIYESR TTDEFDTAWN GLLHRYGLID NAWLTEMYQK RENWVPAYLR GTFFAGIPLN  540
ETTESFFGAF LNAQTPLVEF VSRYERGIER RREAERREDF NTFNLQAFLQ TKEPVEEQCR  600
RLYTLTVFKI FQKEVLQSYS YLGFKIYEEG PVSRYLVRKG GNDNEKCMVT IGVSNLSVAC  660
SCQMFEFEGL LCRHILRVFQ ILDIKEVPSR YILHRWTKNA EYGTIHDLES AGSPQELKSL  720
MLWSLRDTAS KYIEAGATSL DKHKLAYEIM REGGRKLGW
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015888264.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015888263.10.0protein FAR1-RELATED SEQUENCE 7-like isoform X1
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLW9RS140.0W9RS14_9ROSA; Protein FAR1-RELATED SEQUENCE 7
STRINGXP_010105698.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]