PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015888265.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family FAR1
Protein Properties Length: 750aa    MW: 86577 Da    PI: 8.2923
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015888265.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.46.7e-2034109190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fY  YAk++GF++r+ + ++s+++g++ +r+fvCskeg++ +              +rtgC a ++v+++++gkw+++ + ++HnH+l 
  XP_015888265.1  34 EFYTLYAKRTGFKIRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCPALIRVQRRDSGKWVIDLFLKDHNHDLG 109
                     6***************************************876..............589***************************995 PP
2FAR168.31.9e-21189264190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fY++YA ++GF++r+ +  +sk +g+it+r+fvCskeg+++++              r gC a +++k++++g+w+v++l+++HnHel+
  XP_015888265.1 189 QFYQAYAANAGFRIRIGQLFRSKLDGSITSRRFVCSKEGFQHPS--------------RLGCGAFMRIKRQDSGRWVVDRLQKDHNHELN 264
                     6***************************************9994..............789***************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1534109IPR004330FAR1 DNA binding domain
PfamPF031015.4E-17189264IPR004330FAR1 DNA binding domain
PfamPF105511.9E-27364456IPR018289MULE transposase domain
PROSITE profilePS5096610.348626674IPR007527Zinc finger, SWIM-type
PfamPF044342.8E-8631671IPR007527Zinc finger, SWIM-type
SMARTSM005759.7E-7649676IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MVPAMNHVNG EDEGESSLEP YVGLEFDSAE DAREFYTLYA KRTGFKIRTG QLYRSRTDGT  60
VSSRRFVCSK EGFQLNSRTG CPALIRVQRR DSGKWVIDLF LKDHNHDLGP MGENNPPTLQ  120
RKISLATTKP VLDVSHRPRI KSVEEIGDGR PCPSGVINAK RLKREGDDMQ SKVAPFAGLE  180
FNSANDGYQF YQAYAANAGF RIRIGQLFRS KLDGSITSRR FVCSKEGFQH PSRLGCGAFM  240
RIKRQDSGRW VVDRLQKDHN HELNYQLEVD KKSPTSSKRL LEEESGGLES EDIFNINSGN  300
LVKRSRENHI GSDWYRVLLE YFQNRQAEDT GFFYAVEVDN GSCMSIFWAD GRSRFSCSQF  360
GDTVIFDTSY RKSIYLVPFA TFVGVNHHKQ PVLLGCALIA DESVESFTWL FQTWLRAMSG  420
RRPFSIIADQ DKVIQQAIRQ VFPGTHHRFS LWQMKAKERE YLNLMDGAFK YEYEKCIYES  480
RTTDEFDTAW NGLLHRYGLI DNAWLTEMYQ KRENWVPAYL RGTFFAGIPL NETTESFFGA  540
FLNAQTPLVE FVSRYERGIE RRREAERRED FNTFNLQAFL QTKEPVEEQC RRLYTLTVFK  600
IFQKEVLQSY SYLGFKIYEE GPVSRYLVRK GGNDNEKCMV TIGVSNLSVA CSCQMFEFEG  660
LLCRHILRVF QILDIKEVPS RYILHRWTKN AEYGTIHDLE SAGSPQELKS LMLWSLRDTA  720
SKYIEAGATS LDKHKLAYEI MREGGRKLGW
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015888265.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015888263.10.0protein FAR1-RELATED SEQUENCE 7-like isoform X1
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLW9RS140.0W9RS14_9ROSA; Protein FAR1-RELATED SEQUENCE 7
STRINGXP_010105698.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]