PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015888573.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

G2-like

Protein Properties

Length: 269aa MW: 29369.7 Da PI: 7.9076

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015888573.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.8	2.5e-33	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl XP_015888573.1 45 KQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.243	42	102	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.3E-32	43	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.58E-17	44	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.2E-26	45	100	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-7	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	3.3E-24	131	177	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MYHAKKISTA SLVPHKAQSA EQIANAGVLT GSPVKNSTPP GGSGKQRLRW TSDLHDRFVD 60 AITQLGGPDR ATPKGVLRVM GVPGLTIYHV KSHLQKYRLA KFLPESPADG SKDEKKGSGD 120 SLSGSDSSTG VQINEALKMQ MEVQKRLHEQ LEVQRQLQMR IEAQGKYLQK IIEEQQKLGG 180 VIKASESIPS AEDNKQEPSE SETPADTSAG PSFPGKRQRT DDGLPDESTS SPVQPKADQE 240 NSLVDQWNQD LYENDALFGS NSEGVKRKR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-22	44	102	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015888573.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015888573.1	0.0	myb family transcription factor PHL7-like isoform X2
Swissprot	Q9SJW0	5e-77	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	M5VRH6	1e-142	M5VRH6_PRUPE; Uncharacterized protein
STRING	EMJ03601	1e-142	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	6e-69	G2-like family protein