PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015888894.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 437aa    MW: 48732.4 Da    PI: 5.9728
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015888894.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.26.9e-14223274155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A++++k+L+
  XP_015888894.1 223 QRMTHIAVERNRRRQMNDHLNVLRSLMPTS---YIQRGDQASIVGGAIDFVKELE 274
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.21E-13221278No hitNo description
PROSITE profilePS5088815.777222273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16222288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-11223274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-14223287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-11228279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.619365437IPR002912ACT domain
CDDcd021160.00683366413No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MERLQGPINP CFFGDHLDVE CLEQGLSSSA GTWRFEEEEE EEAQLSIPGL DDRMPFLQML  60
QSVESPAPFF PLKEPSFQAL LRLQHLKKPW ELGNSFNMPQ METQIQALEL ESCVTQHIDF  120
VEELHSPIKS EANKDVNNQH HHPHSTEGVS SECNQEQQPS SVENNSASNG SVSASTWARA  180
QAQTHPQNAP KQIHSSKSLP VTRERRKRKR IRPAKNKEEV ESQRMTHIAV ERNRRRQMND  240
HLNVLRSLMP TSYIQRGDQA SIVGGAIDFV KELEQLLQTL EAQKKMRKSE GGGGSNNGSD  300
TPASSSSSSA MAVASNGMFM SLSQYKIGSE ESNNNNNNNN GDEVTAENKS EAADIEVTVI  360
QTHVNLKIQC PRRPGQLLKA IVALEDLRLS ILHLNINTSH STVLYSFNLK IEDGCKLGSA  420
DEIAGAVHQI FRYMESS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209RRKRKR
2223234RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015888894.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894303e-87KP689430.1 Prunus pseudocerasus isolate Unigene20562 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015888894.10.0transcription factor bHLH67 isoform X2
TrEMBLA0A2P5FHC30.0A0A2P5FHC3_TREOI; Basic helix-loop-helix transcription factor
STRINGEMJ192390.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68943449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.16e-74bHLH family protein