PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015888931.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 455aa    MW: 51575.8 Da    PI: 6.9376
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015888931.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.35.4e-3296200199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                     f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  XP_015888931.1  96 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDVVSFQRGvGEsGK 190
                     89***************************966778999*************************************************66577788 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l++ ++r+
  XP_015888931.1 191 NRLYIDWRRR 200
                     8999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-4188201IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.72E-3093199IPR015300DNA-binding pseudobarrel domain
CDDcd100171.80E-2694190No hitNo description
SMARTSM010192.0E-2396201IPR003340B3 DNA binding domain
PfamPF023622.0E-2996200IPR003340B3 DNA binding domain
PROSITE profilePS5086314.9696201IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MSKEYAQEFR REYSDKEEEE DQEEEDEQLQ NQWLIRRFES PSEDHHHESA AAAAASETTN  60
FNSKLHLIDL SLKSSDEEAS DGSRGGWSGI EREHMFDKVV TPSDVGKLNR LVIPKQHAEK  120
YFPLDSSTNE KGLLLNFEDR NGKPWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDVVS  180
FQRGVGESGK NRLYIDWRRR PYAPPNPATS LLAPLQLPSD HLHHHHQQQQ HQHFPQSVRW  240
AGRLYSMPQP QPVSMPLRHH EHFQYQLSSY NNVHPYNCHH HQQYYSSNYH HGGSTTSSQY  300
DYYNFLRSSS GGGGGGSSLL HSQLHQAEEV QRVGGGGGGG NIVPMVIESV PVGRHGTNTG  360
TNTNTQPSHE SKRLRLFGVN MEYKEEPDCD ILSSSRTAVP DVAMASQSLL HHHLSSSSLE  420
VKLPNHSQPS TIPIPIPAEF LKKGKSTSLS FALDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-66912013114B3 domain-containing transcription factor NGA1
5os9_B2e-66912013114B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015888931.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015888931.10.0B3 domain-containing protein Os03g0120900-like isoform X3
TrEMBLA0A061DTX91e-104A0A061DTX9_THECC; AP2/B3-like transcriptional factor family protein, putative
STRINGEOX955411e-104(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.13e-68B3 family protein