PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015889088.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

LBD

Protein Properties

Length: 245aa MW: 28035.6 Da PI: 6.7843

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015889088.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	113.6	1.3e-35	10	110	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCa+Ck++r+kC ++C lapyfpa++ ++f+n+ +lFG+sn++k+++++++++r++a++s+++e++ r +dPv+G++gv ++l++++ + +++l+ XP_015889088.1 10 ACASCKHQRKKCDDNCELAPYFPASRFREFQNAYRLFGVSNIQKIMASVEPHQRQAAAESILMEGNYRRNDPVNGCLGVCRNLNSHIISYEKQLK 104 7********************************************************************************************** PP DUF260 96 llkeel 101 ++++l XP_015889088.1 105 IVNQQL 110 999985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.245	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.9E-33	10	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MSKESGVYQA CASCKHQRKK CDDNCELAPY FPASRFREFQ NAYRLFGVSN IQKIMASVEP 60 HQRQAAAESI LMEGNYRRND PVNGCLGVCR NLNSHIISYE KQLKIVNQQL AMFRQREKFD 120 RHQNHLSNSY ISSMPSISSE KSSSLNLHRD HQFDALKFPP PLLSDMARDD YMGDAKNLQQ 180 AGYIYRSTLE EGADLKPFDI QLMDQIMESD EHGSVLETEE LSAGLKAHGK QLLQGMRTED 240 EMKYA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-21	6	110	7	111	LOB family transfactor Ramosa2.1
5ly0_B	9e-21	6	110	7	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015889088.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015889088.1	0.0	LOB domain-containing protein 22-like
Swissprot	Q9LRW1	3e-34	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	A0A2N9EC89	1e-80	A0A2N9EC89_FAGSY; Uncharacterized protein
STRING	XP_006475549.1	7e-67	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14432	11	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	5e-36	LOB domain-containing protein 22

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]