PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015889152.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 291aa    MW: 31728.5 Da    PI: 8.1607
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015889152.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.3e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd  l+ + +++G+g +W + + + g++R++k+c++rw++yl
   XP_015889152.1 14 RGPWSPEEDATLKTYLQKHGTGgNWIALPLKAGLNRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding40.75.6e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd  ++ ++  lG++ W+ Ia++++ gRt++++k++w++
   XP_015889152.1  69 GGFTEEEDYVIYSLFCTLGSR-WSVIASHLP-GRTDNDVKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.223962IPR017930Myb domain
SuperFamilySSF466891.6E-2712109IPR009057Homeodomain-like
SMARTSM007171.8E-111364IPR001005SANT/Myb domain
PfamPF002491.2E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-231569IPR009057Homeodomain-like
CDDcd001671.06E-81662No hitNo description
PROSITE profilePS5129419.7863117IPR017930Myb domain
SMARTSM007173.4E-1167115IPR001005SANT/Myb domain
PfamPF002491.2E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-2270116IPR009057Homeodomain-like
CDDcd001673.14E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGRAPCCDKA KVKRGPWSPE EDATLKTYLQ KHGTGGNWIA LPLKAGLNRC GKSCRLRWLN  60
YLRPDIKHGG FTEEEDYVIY SLFCTLGSRW SVIASHLPGR TDNDVKNYWN TKLKKKVGLA  120
GKAGTCSTAT SNIINHDPQH PSNLGLVQYH YQFPPAPSIS NTNHGKSSPN NHSSDTNSCL  180
VSDHDVVYGQ QPHGSDFNTK ANTNTIIINN NNIGNKISLI SPHQEQQDMV VNPTSCSSYT  240
RGLEKSNLGS CSGIGSTTTI TSTAAVQEDG ILMELGFESS NIDLLLNGFG F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-261411727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015889152.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024932454.10.0transcription factor RAX1-like
TrEMBLQ4A3I72e-76Q4A3I7_HUMLU; Myb-like protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.13e-68MYB family protein