PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015889196.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

HRT-like

Protein Properties

Length: 795aa MW: 86704 Da PI: 9.5216

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015889196.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	47.3	3.4e-15	280	310	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l svC+r Pv+gR RC+eHKGm+i XP_015889196.1 280 ICGVALTLDSVCTRAPVEGRMRCAEHKGMKI 310 8****************************97 PP
2	HRT-like	44.2	3.2e-14	363	391	1	29
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGm 29 iCG++l dGs+ +rq+v+g+KRC eHKG+ XP_015889196.1 363 ICGFTLTDGSPSRRQAVQGNKRCDEHKGR 391 8***************************7 PP
3	HRT-like	46.4	6.5e-15	428	457	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG+++e+G+ Ckr+Pv+g+KRC++H GmR XP_015889196.1 428 ICGATTENGTACKREPVEGNKRCRQHSGMR 457 8****************************9 PP
4	HRT-like	43	7.8e-14	498	527	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CG+++++G+ Ckr+Pv+g+KRC++H GmR XP_015889196.1 498 TCGATTNNGTACKREPVEGNKRCRKHSGMR 527 7****************************9 PP
5	HRT-like	45.1	1.7e-14	562	591	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CG+++++G+ Ckr+Pv+g+KRC++H GmR XP_015889196.1 562 TCGATTNNGTACKREPVEGNKRCRQHSGMR 591 7****************************9 PP
6	HRT-like	47	4.3e-15	626	655	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CGv++++G+ Ckr+Pv+g+KRC++H GmR XP_015889196.1 626 TCGVTTNNGTACKREPVEGNKRCRQHSGMR 655 7****************************9 PP
7	HRT-like	47.4	3.2e-15	690	719	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CG+++++G+ Ckr+Pv+g+KRC++H GmR XP_015889196.1 690 TCGATTNNGTACKREPVEGNKRCWQHSGMR 719 7****************************9 PP
8	HRT-like	43	7.4e-14	760	789	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CG+++++G+ C+r+Pv+g+ RC++H GmR XP_015889196.1 760 TCGATTRNGTACTRKPVPGNRRCWQHTGMR 789 7****************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 795 aa Download sequence Send to blast
MSQSQQEEEM VGSDSTAVVV SRSKREDRTR AKHGTKFSQW KILVGPCDWE AYSLGKDGAE 60 RYRFHNLPGI STPGVYELAI PLSQTGGLGR NVAKLDPEGM VVVYIGHAED VRTRLQHYGR 120 TGAHLGSGCS TAHPTPCLPK GPGLFEEILS RGYPIMFRWA PMQSKSDAQQ TETRLLDKFD 180 YAWNKRINGS RRPDDILEKL VKISSGCNHS PTIDRRLLSW SLGQMGIRIK AAKSLATENN 240 FNACADEERP NILSRVFKFG RSRPRSVLDT SGITKWNNVI CGVALTLDSV CTRAPVEGRM 300 RCAEHKGMKI NELTTVRISN SNGIYGSQYG VIDSSKSDGH GKSGFKHGTV TVEYHVSKSF 360 SPICGFTLTD GSPSRRQAVQ GNKRCDEHKG RGIGKSNSRL VSTEEKPLYT PDVFESNSGD 420 TSEYDNIICG ATTENGTACK REPVEGNKRC RQHSGMRAGG DTSEYYNNSA AIRNHGRLKY 480 EVSSSRINQN MYGIGVVTCG ATTNNGTACK REPVEGNKRC RKHSGMRAGG DTLAAICNHG 540 RLEDEVLSSR INQNKNGIGV VTCGATTNNG TACKREPVEG NKRCRQHSGM RAGGDTSAAI 600 CNHGRLEDEV LSSRINQNKN GRGVVTCGVT TNNGTACKRE PVEGNKRCRQ HSGMRAGGDT 660 SDAICNHGRL EDEVLSSRVN QNKNGIGVVT CGATTNNGTA CKREPVEGNK RCWQHSGMRA 720 GGDTSEYYNN SAAIRNHGRL KYEVSSSRIN QNMYGIGVVT CGATTRNGTA CTRKPVPGNR 780 RCWQHTGMRA GTSYY

Sequence ? help Back to Top

Protein Sequence Length: 795 aa Download sequence Send to blast

MSQSQQEEEM VGSDSTAVVV SRSKREDRTR AKHGTKFSQW KILVGPCDWE AYSLGKDGAE  60
RYRFHNLPGI STPGVYELAI PLSQTGGLGR NVAKLDPEGM VVVYIGHAED VRTRLQHYGR  120
TGAHLGSGCS TAHPTPCLPK GPGLFEEILS RGYPIMFRWA PMQSKSDAQQ TETRLLDKFD  180
YAWNKRINGS RRPDDILEKL VKISSGCNHS PTIDRRLLSW SLGQMGIRIK AAKSLATENN  240
FNACADEERP NILSRVFKFG RSRPRSVLDT SGITKWNNVI CGVALTLDSV CTRAPVEGRM  300
RCAEHKGMKI NELTTVRISN SNGIYGSQYG VIDSSKSDGH GKSGFKHGTV TVEYHVSKSF  360
SPICGFTLTD GSPSRRQAVQ GNKRCDEHKG RGIGKSNSRL VSTEEKPLYT PDVFESNSGD  420
TSEYDNIICG ATTENGTACK REPVEGNKRC RQHSGMRAGG DTSEYYNNSA AIRNHGRLKY  480
EVSSSRINQN MYGIGVVTCG ATTNNGTACK REPVEGNKRC RKHSGMRAGG DTLAAICNHG  540
RLEDEVLSSR INQNKNGIGV VTCGATTNNG TACKREPVEG NKRCRQHSGM RAGGDTSAAI  600
CNHGRLEDEV LSSRINQNKN GRGVVTCGVT TNNGTACKRE PVEGNKRCRQ HSGMRAGGDT  660
SDAICNHGRL EDEVLSSRVN QNKNGIGVVT CGATTNNGTA CKREPVEGNK RCWQHSGMRA  720
GGDTSEYYNN SAAIRNHGRL KYEVSSSRIN QNMYGIGVVT CGATTRNGTA CTRKPVPGNR  780
RCWQHTGMRA GTSYY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015889196.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015889196.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2-like isoform X1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9409	31	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	4e-94	effector of transcription2